Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e22
         (632 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6FH79 Cluster: Na+/H+ antiporter; n=1; Moritella sp. P...    35   1.4  
UniRef50_Q2JMF8 Cluster: Single-stranded-DNA-specific exonucleas...    34   3.3  
UniRef50_Q53D41 Cluster: JM29; n=3; Cercopithecine herpesvirus 1...    33   7.5  

>UniRef50_A6FH79 Cluster: Na+/H+ antiporter; n=1; Moritella sp.
           PE36|Rep: Na+/H+ antiporter - Moritella sp. PE36
          Length = 403

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -1

Query: 485 MTLLIICSSLLGVRILRSIISLNSFLILGWLFWLAV 378
           ++L   C S+L +    +I++L  +LI+GWL W+AV
Sbjct: 184 LSLACACISILWLLHRNNIMTLTPYLIIGWLLWVAV 219


>UniRef50_Q2JMF8 Cluster: Single-stranded-DNA-specific exonuclease
           RecJ; n=2; Synechococcus|Rep:
           Single-stranded-DNA-specific exonuclease RecJ -
           Synechococcus sp. (strain JA-2-3B'a(2-13))
           (Cyanobacteria bacteriumYellowstone B-Prime)
          Length = 758

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = +1

Query: 115 CAYSFVLSVKRFQAVEVRVEDQVRELATSLNQPQHLLVILSRQRISRHYPDGRKNQLQIL 294
           C  +  L+++R  A  V  + Q R LA  +     LLV   R  ++    D    QLQ+L
Sbjct: 432 CLAAVQLALQRELAARVSPDQQARALAVEIILDWELLVSQDRDGVAEL--DEVYRQLQLL 489

Query: 295 KAFLRGNPN 321
           + F  GNPN
Sbjct: 490 QPFGHGNPN 498


>UniRef50_Q53D41 Cluster: JM29; n=3; Cercopithecine herpesvirus
           17|Rep: JM29 - Macaca fuscata rhadinovirus
          Length = 536

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 183 KRTSYKPQPAPTSFSYPQSAAHKPSLSGW-QEKPATNT 293
           K T  +PQP P  FS+PQ+ A  P L+   Q  P T+T
Sbjct: 400 KDTDQRPQPPPVQFSWPQTYASAPYLAYQPQWYPGTDT 437


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,259,533
Number of Sequences: 1657284
Number of extensions: 9762219
Number of successful extensions: 26937
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26927
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)