Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e22
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    28   0.97 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   3.0  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   5.2  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    26   5.2  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   6.9  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    25   6.9  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.9  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   9.1  

>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 189 TSYKPQPAPTSFSYPQSAAHKPSLSGWQEKPATN 290
           TS +  PAPT+  +P   +  PS+S  Q +PA N
Sbjct: 547 TSQQLNPAPTAMPHPNITSPSPSISVTQ-RPAVN 579


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 348 YPSSQTGLSGNSQPKQPPKYQETVQRNN 431
           + +S T ++  SQP+ PP+  E++Q +N
Sbjct: 764 HANSSTPMNYVSQPESPPQSYESIQNDN 791


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 204 QPAPTSFSYPQ 236
           QPAPT FSYP+
Sbjct: 655 QPAPTEFSYPE 665


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 477 ADYLF*FVGSSNTEEHYFFEQFLDTWVVVL-AGCSL 373
           ADY F  +      EH F  Q +DTW+  + A C L
Sbjct: 210 ADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPL 245


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 128  NEYAHYKY**FFIHLAKHFNFSDPSKQFYTIQMRSPRSV 12
            NE+A+Y    F + L +H     P+KQ    Q +SP  V
Sbjct: 1930 NEWANY----FMLCLIRHATRDSPAKQAPQFQSKSPECV 1964


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 145 FLHSIQMNMHIININSFLSILRNT 74
           F H + +N+ I +I SFL +L NT
Sbjct: 309 FAHGMLLNLGIGSIGSFLYLLSNT 332


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 503 IGRWVRMTLLIICSSLLGVRILRSIISLNSFLILGW 396
           IGRWV    L  C  +     LRS+I L++     W
Sbjct: 393 IGRWVLTNQLRKCGIIGATHPLRSVIPLDNIFCNIW 428


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 178 QVRELATSLNQPQHLLVILSRQRISRH 258
           Q+ ELA S+N P   L ++   R S H
Sbjct: 271 QIEELAASINFPLKKLYVIDASRRSTH 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,611
Number of Sequences: 5004
Number of extensions: 42533
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)