Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e20
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0190 - 1404374-1404402,1404491-1404558,1404830-1404967,140...    29   2.7  
11_01_0189 - 1493618-1493637,1493728-1493795,1494070-1494207,149...    28   3.6  
09_02_0609 - 11197630-11197977,11198631-11198702                       27   6.3  
02_01_0398 - 2899311-2899454,2900679-2900807,2900927-2900998,290...    27   6.3  
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348...    27   8.4  
04_04_0229 - 23766488-23766946,23767901-23768128                       27   8.4  
03_02_0372 + 7864015-7864065,7864167-7864208,7864292-7864322,786...    27   8.4  

>12_01_0190 -
           1404374-1404402,1404491-1404558,1404830-1404967,
           1405414-1405465,1405570-1405669,1406938-1407088,
           1407212-1407311,1407471-1407585,1407786-1407950,
           1408050-1408105,1408199-1408256
          Length = 343

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 214 PAISSSKVRASIISDTSLQSVVFESFRDLVF 122
           PA++ +   A ++  TSL S + ESF+ ++F
Sbjct: 59  PAVTEAAEPAEVVPRTSLASTIAESFKQMLF 89


>11_01_0189 -
           1493618-1493637,1493728-1493795,1494070-1494207,
           1494647-1494698,1494803-1494902,1495606-1495681,
           1495757-1495844,1496248-1496342,1496506-1496605,
           1496765-1496879,1497077-1497241,1497362-1497547
          Length = 400

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 214 PAISSSKVRASIISDTSLQSVVFESFRDLVF 122
           PA + +   A I+  TSL S + ESF+ ++F
Sbjct: 83  PAATEAAEPAEIVPRTSLASTIAESFKQMIF 113


>09_02_0609 - 11197630-11197977,11198631-11198702
          Length = 139

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 111 KCPPKTKSRKLSKTTDCKDVSEIIEALTLDEEMAGK 218
           + PP    RK   + DC   S +I  L +  E++GK
Sbjct: 43  RAPPHADDRKNDDSGDCDGDSGVIAILPVSREVSGK 78


>02_01_0398 -
           2899311-2899454,2900679-2900807,2900927-2900998,
           2901667-2901790,2901835-2901882,2902145-2902197,
           2902932-2903030,2903141-2903539
          Length = 355

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 108 KKCPPKTKSRKLSKTTDCKDVSEIIEALTLDE 203
           KK     +SRKL++  DC  +S I +A  LD+
Sbjct: 314 KKLDGFLESRKLNEGLDCDTISRICQAYDLDK 345


>07_01_0460 +
           3486040-3486758,3486804-3486876,3487067-3487132,
           3488090-3488251,3488427-3488457,3488767-3489206
          Length = 496

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 306 PSMHTRLRYIGHCSLEPSVPKNRL*FQYIQSSLTYTYVFIYYS 434
           P ++  L Y G  S+ P + ++ L  QYI  ++   +V IYYS
Sbjct: 371 PHLYGWLMYFGLFSMYPLICRDHLLLQYI--AVLGLFVLIYYS 411


>04_04_0229 - 23766488-23766946,23767901-23768128
          Length = 228

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 417 HRYKLKTIVYTEIITCFLVQKAPENNVQYTVVSYASKEPLE 295
           H YK K ++Y +I+T  L  K   + V   V SY  +E LE
Sbjct: 85  HWYKPKLLLYVDIVT-VLASKGLRSEVD-KVCSYLKREQLE 123


>03_02_0372 +
           7864015-7864065,7864167-7864208,7864292-7864322,
           7864472-7864653
          Length = 101

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 364 GTEGSREQCPIYRSLVCIEG 305
           GT G++E+CP Y +L   +G
Sbjct: 77  GTSGNKEECPCYNNLKSSQG 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,318,449
Number of Sequences: 37544
Number of extensions: 209710
Number of successful extensions: 414
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)