Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e20
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.30 
SB_33541| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   2.0  
SB_15287| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   6.5  
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)               27   6.5  

>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2126

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 21/90 (23%), Positives = 35/90 (38%)
 Frame = +3

Query: 135 RKLSKTTDCKDVSEIIEALTLDEEMAGKSTRQPSRXXXXXXXXXXXXHNKESCVPMVPSM 314
           R+  K T C++V +    L +      K+ + P              H    C+ M  S+
Sbjct: 589 RRYLKCTHCEEVFDHSNLLQIHM----KARKVPKNKANKAKQTLGGFHGPHVCIRMCKSL 644

Query: 315 HTRLRYIGHCSLEPSVPKNRL*FQYIQSSL 404
           H+  +   HC L P   KN L F  +  ++
Sbjct: 645 HSSAKIRLHCILNPVKAKNVLLFWQVHHNI 674


>SB_33541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +3

Query: 78  KFNKMKG-SVCKKCPPKTKSRKLSKTTDC---KDVSEIIEALTLDEEMAGKSTRQPSR 239
           K+ K KG S C++ PP+ + ++  K  DC   KD+  I +   L  + A  + +Q  R
Sbjct: 360 KWIKEKGDSSCQRLPPRYQCQQFVKDKDCIEEKDIKHIAKTCFLPVDDAADNIQQRKR 417


>SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 24.6 bits (51), Expect(2) = 2.0
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +3

Query: 96  GSVCKKCPPKT-KSRKLSKTTDC 161
           G+ C+KCPP T K   +    DC
Sbjct: 209 GASCEKCPPGTYKEGSVGMCEDC 231



 Score = 23.0 bits (47), Expect(2) = 2.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 90  MKGSVCKKCPP 122
           + G+VC++CPP
Sbjct: 175 LAGTVCRECPP 185


>SB_15287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +2

Query: 311 DAYETTVYWTLFSGAFCTKKQV---IISVYTIVFNLYLCIYLLFDVIGT*KFVYINI*LY 481
           D Y T VY  +     C    V   I SVYT+V     C+Y L DV  T   VY  + +Y
Sbjct: 121 DMYITCVYTLVDMYVTCVYTLVDVYITSVYTLVDMYVTCVYTLVDVYIT--SVYTLVDMY 178

Query: 482 I 484
           I
Sbjct: 179 I 179



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +2

Query: 311 DAYETTVYWTL---FSGAFCTKKQVIISVYTIVFNLYLCIYLLFDVIGT*KFVYINI*LY 481
           D Y T VY  +    +  +      I SVYT+V     C+Y L D+  T   VY  + +Y
Sbjct: 154 DMYVTCVYTLVDVYITSVYTLVDMYITSVYTLVDMCVTCVYTLVDMYVT--CVYTLVDMY 211

Query: 482 I 484
           I
Sbjct: 212 I 212


>SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 268 NRHIIKKAVFQWFLRCIRDYGILDI 342
           +RH+   A F W L CI  Y ILD+
Sbjct: 554 SRHV-STAPFTWLLDCISHYQILDV 577


>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1299

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 117 PPKTKSRKLSKTTDCKDV 170
           PPK+K RKL K TD KD+
Sbjct: 64  PPKSKKRKLDKNTD-KDI 80


>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
          Length = 1066

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 127 VFGGHFLQTEPFILLNFYDYDNVNLV 50
           +FGGH L       L FYD+++  L+
Sbjct: 330 IFGGHLLGVRSVSGLTFYDWESTELI 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,629,185
Number of Sequences: 59808
Number of extensions: 260154
Number of successful extensions: 608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)