Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e20
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa...    31   0.43 
At5g59845.1 68418.m07504 gibberellin-regulated family protein si...    29   2.3  
At3g59150.1 68416.m06594 F-box family protein contains F-box dom...    27   5.3  
At5g26642.1 68418.m03156 reverse transcriptase-related low simil...    27   7.0  
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g...    27   9.3  
At3g55160.1 68416.m06126 expressed protein                             27   9.3  
At2g19270.1 68415.m02249 expressed protein                             27   9.3  
At1g17345.1 68414.m02114 auxin-responsive protein-related simila...    27   9.3  

>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
            putative ATP-dependent helicases
          Length = 1058

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +3

Query: 105  CKKCPPKTKSRKLSKTTDCKDVSEII--EALTLDEEMAGKSTR 227
            C+KCPP+T   K ++T  C+  +E++  +A  +  ++  K+T+
Sbjct: 1016 CEKCPPETGCPKCAQTFGCRGYNELLHKKAAIMIMQVTKKNTK 1058


>At5g59845.1 68418.m07504 gibberellin-regulated family protein
           similar to SP|P27057 GAST1 protein precursor
           {Lycopersicon esculentum}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 89

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 382 NYNLFFGTEGSREQCPIYRSLVCIEGT 302
           NY +  GT G++++CP YR +   +GT
Sbjct: 59  NYCVPSGTYGNKDECPCYRDMKNSKGT 85


>At3g59150.1 68416.m06594 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 509

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 229 NHLDRRSLK*KNLNRHIIKKAVFQWFLRCIRDYGILDIVL 348
           +H+ R SLK +     +    V +W L  +RD G+LD+ L
Sbjct: 125 SHVQRVSLKCRQGG--VEPDCVIKWILTTVRDLGVLDLSL 162


>At5g26642.1 68418.m03156 reverse transcriptase-related low
           similarity to reverse transcriptase [Arabidopsis
           thaliana] GI:976278
          Length = 411

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 271 RH-IIKKAVFQWFLRCIRDYGILDIVLWSLLY 363
           RH   KK++F+W    + D  ++D V WS+++
Sbjct: 154 RHEFFKKSLFEWVYGNLGDDAVVDGVPWSVMF 185


>At4g04970.1 68417.m00722 callose synthase, putative /
           1,3-beta-glucan synthase, putative similar to callose
           synthase 1 catalytic subunit GI:13649388 from
           [Arabidopsis thaliana]
          Length = 1768

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 302 GSFDAYETTVYWTLFSGAFCTKKQVIISVYTIV 400
           G FD      YW  FSG     K V++ +Y  V
Sbjct: 199 GEFDDMTGMPYWPSFSGDCAFLKSVVMPIYKTV 231


>At3g55160.1 68416.m06126 expressed protein
          Length = 2149

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +1

Query: 154  QIVKMYQKLLRPSL*MRKWLVKVQDNHLDRRSLK*KNLNRHIIKKAVFQWFLRCIR 321
            +  +++Q   RP+L  +K    +   HL+ R L+  +   + ++ A  +WFLR ++
Sbjct: 1568 EAAEVFQITQRPNLQSQKVPEALDFPHLNERLLRCISDQSYEVRLATLKWFLRFLK 1623


>At2g19270.1 68415.m02249 expressed protein 
          Length = 359

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 323 SRMHRRNHWNTAFFIMWRFKFFHFKLRRSRWL 228
           S++H+R H  TA F+  + K      RRSR L
Sbjct: 316 SKLHKRKHQITALFMDMKHKESELTERRSRGL 347


>At1g17345.1 68414.m02114 auxin-responsive protein-related similar
           to GP:10185820 auxin-induced protein TGSAUR22 {Tulipa
           gesneriana}
          Length = 131

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 78  KFNKMKGSVCKKCPPKTKSRKLSKTTDCKDVSEIIEALTLDEEMAGKSTR 227
           K  K+K ++ KK P  TK+   +  T    VSE+ +   L     GKS R
Sbjct: 6   KLTKLKSAI-KKWPSLTKNHHSTMCTASTAVSEVSKCEDLHVVYVGKSRR 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,691,944
Number of Sequences: 28952
Number of extensions: 187487
Number of successful extensions: 430
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)