Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e16
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    23   2.6  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.6  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   4.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.9  

>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = +2

Query: 308 YNCEELDTMMEKLANLRPALINRSS--PYRC 394
           Y CE  D    ++ANLR  L   +   PY C
Sbjct: 38  YRCEHCDRQFVQVANLRRHLRVHTGERPYGC 68


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = +2

Query: 308 YNCEELDTMMEKLANLRPALINRSS--PYRC 394
           Y CE  D    ++ANLR  L   +   PY C
Sbjct: 191 YRCEHCDRQFVQVANLRRHLRVHTGERPYGC 221


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 390 DARQRWTSSDTTDGHSATRARVER 461
           + R+R TSS +T+G +  R R  +
Sbjct: 41  EKRKRSTSSQSTEGENDARPRASQ 64


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 314 SYTSVLTPVPFGKKL**IKHALD 246
           +Y S  +P+PF KKL  IK  L+
Sbjct: 270 NYISRHSPIPFIKKLGKIKENLE 292


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 314 SYTSVLTPVPFGKKL**IKHALD 246
           +Y S  +P+PF KKL  IK  L+
Sbjct: 270 NYISRHSPIPFIKKLGKIKENLE 292


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 314 SYTSVLTPVPFGKKL**IKHALD 246
           +Y S  +P+PF KKL  IK  L+
Sbjct: 270 NYISRHSPIPFIKKLGKIKENLE 292


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 314 SYTSVLTPVPFGKKL**IKHALD 246
           +Y S  +P+PF KKL  IK  L+
Sbjct: 270 NYISRHSPIPFIKKLGKIKENLE 292


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,183
Number of Sequences: 336
Number of extensions: 3162
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)