Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e16
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.52 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    29   0.69 
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    27   2.8  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   6.4  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 191 QLNVRNDGNVQSPHGRLSSLVRV*FITASYQTAPALVLMYNCEELDTMMEKL 346
           ++NV   GN+ S    L  L++   +T S++T  ++ +   C +   + EKL
Sbjct: 794 RINVVKFGNLNSLLSCLHELIQPATLTPSFETEKSITMFLGCRDKQAVSEKL 845


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
            Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +2

Query: 269  TASYQTAPALVLMYNCEELDTMMEKLANLRPALIN 373
            ++ Y+ AP+ + + NCE    ++ K+ +++ AL+N
Sbjct: 913  SSGYEKAPSYIKLKNCELQKDILVKIQDIKQALLN 947


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 627 IFYLFHVYRRQQTLQRHFALFRGFSVLFSSKEVVQTLEKL 508
           +  L+ +YR    LQ  F LFR  ++  S +++ Q LE+L
Sbjct: 409 LLLLYIIYRDGIILQDLFRLFRHSNLSTSREQIFQNLEQL 448


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 516 PKFGRLLYWK-KELKSHETMQNVFEEFAASCTHEIN 620
           P  G L+ W  K+ +S E    +  +    CTHE+N
Sbjct: 69  PVEGELVEWAVKKEESIENFSKIVAKLHEPCTHEVN 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,018
Number of Sequences: 5004
Number of extensions: 51126
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)