Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e16
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0508 + 3710435-3710980,3711086-3711238,3711323-3711408,371...    30   2.2  
04_04_1615 + 34793511-34793660,34794013-34794070,34794163-347944...    29   3.9  
11_01_0239 - 1842576-1842741,1843264-1843379,1843667-1843738,184...    29   5.1  

>01_01_0508 +
           3710435-3710980,3711086-3711238,3711323-3711408,
           3711533-3711617,3711705-3711824,3711906-3711974,
           3712088-3712217,3712336-3712406
          Length = 419

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 350 SRASPSLYPVLHSYTSVLTPVPF 282
           S +SPSL P+ H  + VL P+PF
Sbjct: 126 SSSSPSLNPISHGESQVLQPLPF 148


>04_04_1615 +
           34793511-34793660,34794013-34794070,34794163-34794410,
           34794485-34794601,34795309-34795369,34795860-34795954,
           34796048-34796122,34796316-34796401,34796529-34796578,
           34796667-34796707,34796784-34796948,34797204-34797271,
           34797362-34797422,34797878-34798393
          Length = 596

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 474 IVLTKLNADTLLVSPKFGRLLYWKKELKS---HETMQNVFEE 590
           IVLT L A +LL+     RL YW K+      H+ M+ + EE
Sbjct: 29  IVLTLLVAGSLLIERSIHRLSYWLKKTHRNPLHKAMEKMKEE 70


>11_01_0239 -
           1842576-1842741,1843264-1843379,1843667-1843738,
           1844057-1844143,1844479-1844582,1845250-1845307,
           1845582-1845630,1846252-1846577,1846645-1846785
          Length = 372

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = -3

Query: 684 IYQSKYAPMLSMHLCQRSGIFYLFHVYRRQQTLQRHFALFRGFSVLFSSKEVVQTLEKL 508
           I+  K+  +L      ++ +F+   ++ +Q +L+   ALF   +V +  KE+ +  EK+
Sbjct: 248 IFDHKWTHLLKYLAACKTPLFFAAEIHMKQFSLKPMKALFNASTVSYDVKEIERPEEKM 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,384,987
Number of Sequences: 37544
Number of extensions: 305483
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)