Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e16
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22802| Best HMM Match : Dynein_heavy (HMM E-Value=0.0034)           29   3.9  
SB_22801| Best HMM Match : Dynein_heavy (HMM E-Value=1.5e-14)          29   3.9  
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_50802| Best HMM Match : PRC (HMM E-Value=8.3)                       28   6.9  
SB_42827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_58086| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_22802| Best HMM Match : Dynein_heavy (HMM E-Value=0.0034)
          Length = 504

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 466 ANLSTLALVAE*PSVVSLEVQRCRASIRRRAINQSWPEIRE 344
           A+L+ L+ V     ++S EVQ   AS+ R+ + Q W  I E
Sbjct: 403 ASLAALSKVIRGTQLLSAEVQTLAASLLRQEVPQEWTSIWE 443


>SB_22801| Best HMM Match : Dynein_heavy (HMM E-Value=1.5e-14)
          Length = 478

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 466 ANLSTLALVAE*PSVVSLEVQRCRASIRRRAINQSWPEIRE 344
           A+L+ L+ V     ++S EVQ   AS+ R+ + Q W  I E
Sbjct: 340 ASLAALSKVIRGTQLLSAEVQTLAASLLRQEVPQEWTSIWE 380


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = -2

Query: 445 LVAE*PSVVSLEVQRCRASIRRRAINQSWPEIRELLHHCIQFFTVIHQY*RRCRLVRSC 269
           L+A  P  V ++         + A++ SW +  + LH  +    V+  +  RC +   C
Sbjct: 404 LLATSPQAVQVKQSMAALKAEKAALSSSWAKRNDRLHQGLDLQIVLRVHHMRCEIPHRC 462


>SB_50802| Best HMM Match : PRC (HMM E-Value=8.3)
          Length = 426

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 390 DARQRWTSSDTT--DGHSATRARVERFASPIVLTKLNADTLLVSPKFGRLLYWKKELK 557
           D+RQR+   D    +G +  R    R A+ + L       +LV+P + RL +W+  ++
Sbjct: 120 DSRQRFLIYDVNPGEGFNLRRDVYMRVANLVKLLNKKQSWVLVTPPWRRLYHWRSRIE 177


>SB_42827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 372 IARLRIDARQRWTSSDTTDGHSATRARVERFASPIVLTKLNADTLLVSPKFGRLLY 539
           IAR+ +DA+ +W SS+ T     T  R        V+  +NA + L   + GR+ +
Sbjct: 33  IARIVVDAQAKWPSSNITIS-GITYRRDANTKLNEVIDDINAQSKLTCAELGRVCF 87


>SB_58086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 151 VLLTKSIV*AVLHTIECPERWKCSISTWAP**SS--ACLIHHSFLPNG 288
           VLL+ S++ A  H      + +C +STW    SS  AC+I     PNG
Sbjct: 6   VLLSVSVLPAHYHYGNEVRKHRCLLSTWTEDSSSYVACMIEIPVWPNG 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,295,763
Number of Sequences: 59808
Number of extensions: 374571
Number of successful extensions: 818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)