Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11e16
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36060.2 68415.m04428 ubiquitin-conjugating enzyme family pro... 33 0.26
At2g36060.1 68415.m04427 ubiquitin-conjugating enzyme family pro... 33 0.26
At4g15730.1 68417.m02394 expressed protein 29 2.4
At1g62340.1 68414.m07034 subtilisin-like serine protease / abnor... 29 3.2
At3g52560.2 68416.m05785 ubiquitin-conjugating enzyme family pro... 29 4.3
At3g52560.1 68416.m05784 ubiquitin-conjugating enzyme family pro... 29 4.3
At2g02090.1 68415.m00145 SNF2 domain-containing protein / helica... 28 5.6
At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1) ide... 27 9.8
At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1) ide... 27 9.8
>At2g36060.2 68415.m04428 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 146
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 459 RFASPIVLTKLNADTLLV-SPKFGRLLYWKKELKSHETMQNVFEEFAAS 602
RF S I +T +N DT +V S KFG L W+++ + + + +E AAS
Sbjct: 84 RFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKKEMAAS 132
>At2g36060.1 68415.m04427 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 145
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 459 RFASPIVLTKLNADTLLV-SPKFGRLLYWKKELKSHETMQNVFEEFAAS 602
RF S I +T +N DT +V S KFG L W+++ + + + +E AAS
Sbjct: 83 RFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKKEMAAS 131
>At4g15730.1 68417.m02394 expressed protein
Length = 1059
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 184 LHTIECPERWKCSISTWAP 240
L+T + P++W CS+ TW P
Sbjct: 435 LNTEKLPDKWLCSMQTWLP 453
>At1g62340.1 68414.m07034 subtilisin-like serine protease / abnormal
leaf shape1 (ALE1) identical to subtilisin-like serine
protease [Arabidopsis thaliana] GI:16444944
Length = 832
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 290 PALVLMYNCEELDTMMEKLANLRPALINRSSPYRCTTTL 406
P LVL E+ + + L N+ PA I ++ CTTTL
Sbjct: 692 PGLVLPAGFEDYISFLCSLPNISPATIRDATGVLCTTTL 730
>At3g52560.2 68416.m05785 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 147
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 459 RFASPIVLTKLNADTLLVSPK-FGRLLYWKKELKSHETMQNVFEEFAAS 602
RF S + + +N +T +V PK FG L W++E + + + +E + S
Sbjct: 85 RFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKKEMSTS 133
>At3g52560.1 68416.m05784 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 146
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 459 RFASPIVLTKLNADTLLVSPK-FGRLLYWKKELKSHETMQNVFEEFAAS 602
RF S + + +N +T +V PK FG L W++E + + + +E + S
Sbjct: 84 RFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKKEMSTS 132
>At2g02090.1 68415.m00145 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 763
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 450 RVERFASPIVLTKLNADTLL-VSPKFGRLLYWKKELKSHETMQNVFEEFAAS 602
R++ P +L +L +D + + PK R+ Y E K + + EE+ A+
Sbjct: 427 RMKSILGPFILRRLKSDVMQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRAA 478
>At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1)
identical to holocarboxylase synthetase 1 (hcs1)
[Arabidopsis thaliana] GI:19698365
Length = 367
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 507 LVSPKFGRLLYWKKELKS-HETMQNVFEEFAASCTHEINKKYHYAGRDASTAWE 665
+++ +FGR L W L S H+ + + F E + ++ GR WE
Sbjct: 105 IITHRFGRFLIWSPRLSSTHDVVSHNFSELPVGSVCVTDIQFKGRGR-TKNVWE 157
>At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1)
identical to holocarboxylase synthetase 1 (hcs1)
[Arabidopsis thaliana] GI:19698365
Length = 367
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 507 LVSPKFGRLLYWKKELKS-HETMQNVFEEFAASCTHEINKKYHYAGRDASTAWE 665
+++ +FGR L W L S H+ + + F E + ++ GR WE
Sbjct: 105 IITHRFGRFLIWSPRLSSTHDVVSHNFSELPVGSVCVTDIQFKGRGR-TKNVWE 157
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,495,012
Number of Sequences: 28952
Number of extensions: 254113
Number of successful extensions: 538
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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