Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e15
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   2.8  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   2.8  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    27   3.7  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.7  
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    25   8.6  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 489 TMTTSWAESAILVTLIMSCWSEARVVPY 572
           T+ + W   +I+ T I   W + R +PY
Sbjct: 482 TLISKWVSDSIIETSIYDAWIQFRNIPY 509


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 623 CSCNERTQPLLRPARHTVRHHTRLRPAAHYKRDQ 522
           C CN+R  P LRP   T       RP A+  R +
Sbjct: 516 CICNDRAHPKLRPLDRTTFDLRFRRPDANSMRSR 549


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 438 AAHAHTSVPLEPGSL--GRTMTTSWAE 512
           AAHA   +PL PG +   + MT +W E
Sbjct: 33  AAHARKQIPLRPGVILVKKGMTNAWDE 59


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
 Frame = +2

Query: 365 RCGTEC---VRCGADGCVKCLRLLVWPGGTCTHECPSGTRESWAHDDHLMGRICYPGHAY 535
           RCG  C   + C    C K    L  P G C   C     +   + +H+    C+ GH  
Sbjct: 697 RCGELCNKLLSCKTHFCEK----LCHPDGECESSCKKECGKRRMYCEHVCQSPCHAGHPC 752

Query: 536 NE 541
           +E
Sbjct: 753 DE 754


>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 498 TSWAESAILVTLIMSCWSEARVVP 569
           T WA  +I+V L+ S W  + ++P
Sbjct: 60  TGWAAKSIIVKLLPSLWRLSTLIP 83


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 135 RRIQWCRWSVTILAQHNIL 79
           RR+Q+C+W++     H IL
Sbjct: 272 RRVQFCQWTIAAAPGHPIL 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,548
Number of Sequences: 5004
Number of extensions: 48659
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)