BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmte11e15 (741 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 27 2.8 SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 27 2.8 SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 27 3.7 SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.7 SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.5 SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 25 8.6 >SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr 2|||Manual Length = 667 Score = 27.1 bits (57), Expect = 2.8 Identities = 9/28 (32%), Positives = 15/28 (53%) Frame = +3 Query: 489 TMTTSWAESAILVTLIMSCWSEARVVPY 572 T+ + W +I+ T I W + R +PY Sbjct: 482 TLISKWVSDSIIETSIYDAWIQFRNIPY 509 >SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc1|Schizosaccharomyces pombe|chr 2|||Manual Length = 934 Score = 27.1 bits (57), Expect = 2.8 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -2 Query: 623 CSCNERTQPLLRPARHTVRHHTRLRPAAHYKRDQ 522 C CN+R P LRP T RP A+ R + Sbjct: 516 CICNDRAHPKLRPLDRTTFDLRFRRPDANSMRSR 549 >SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|Schizosaccharomyces pombe|chr 1|||Manual Length = 259 Score = 26.6 bits (56), Expect = 3.7 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%) Frame = +3 Query: 438 AAHAHTSVPLEPGSL--GRTMTTSWAE 512 AAHA +PL PG + + MT +W E Sbjct: 33 AAHARKQIPLRPGVILVKKGMTNAWDE 59 >SPCC18.03 |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 1077 Score = 26.6 bits (56), Expect = 3.7 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%) Frame = +2 Query: 365 RCGTEC---VRCGADGCVKCLRLLVWPGGTCTHECPSGTRESWAHDDHLMGRICYPGHAY 535 RCG C + C C K L P G C C + + +H+ C+ GH Sbjct: 697 RCGELCNKLLSCKTHFCEK----LCHPDGECESSCKKECGKRRMYCEHVCQSPCHAGHPC 752 Query: 536 NE 541 +E Sbjct: 753 DE 754 >SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 101 Score = 25.8 bits (54), Expect = 6.5 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = +3 Query: 498 TSWAESAILVTLIMSCWSEARVVP 569 T WA +I+V L+ S W + ++P Sbjct: 60 TGWAAKSIIVKLLPSLWRLSTLIP 83 >SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 396 Score = 25.4 bits (53), Expect = 8.6 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = -1 Query: 135 RRIQWCRWSVTILAQHNIL 79 RR+Q+C+W++ H IL Sbjct: 272 RRVQFCQWTIAAAPGHPIL 290 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,662,548 Number of Sequences: 5004 Number of extensions: 48659 Number of successful extensions: 144 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 144 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 351258950 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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