Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e15
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21785| Best HMM Match : DIX (HMM E-Value=4.4)                       31   1.3  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34)                       28   9.1  
SB_57086| Best HMM Match : PT (HMM E-Value=2.4)                        28   9.1  

>SB_21785| Best HMM Match : DIX (HMM E-Value=4.4)
          Length = 480

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 474 LVPEGHSCVHVPPGQTK-SLRHFTHPSAPQRTHSVPH 367
           ++  GH   H P GQ + SLR  T P APQR   V H
Sbjct: 411 IIRRGHE--HAPNGQNRPSLRQKTTPPAPQRGFHVSH 445


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +2

Query: 365 RCGTECVRCG--ADGCVKCLRLLVWPGGTCTHECPSGT 472
           +CG  C  C   A  C+ C    V    +C + CPSGT
Sbjct: 720 QCGQTCQECTKTASHCITCGDNRVLSNNSCINLCPSGT 757



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +2

Query: 368 CGTECVRCGADG-CVKCLRLLVWPGGTCTHECPSGT 472
           C + C  C   G C  C+  L     TC   CPSGT
Sbjct: 674 CQSGCSACHVTGQCTACMLGLHLYNKTCVPSCPSGT 709



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +2

Query: 368  CGTECVRCG--ADG-CVKCLRLLVWPGGTCTHECPSGTRESWAHDDHLMGRICYPGHA 532
            C   C  C   A G C++C    V+   TC  ECP GT       D    R C P HA
Sbjct: 967  CHVSCNACRGPAKGDCLRCNPGHVYFKHTCVTECPEGTFVD--DSDGADARRCRPCHA 1022


>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 173 FDSTLLRLSHHLFVAFNGVVGLSRFWHNTIF*VTFRNLKSWMVRARGV 30
           F  T+  +SH   +   G +GLS   H+    +TF+  K W V   GV
Sbjct: 199 FLGTVTNVSHVTTIVRGGELGLSGAMHSQPVNLTFKLEKHWSVSCEGV 246


>SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1074

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = -2

Query: 683  VACRRRGSYAGAAVALGHARCSCNERTQPLLRPARHTVRHHTRL 552
            +  +R  SY    +   H R     +  P   P R T +HH  L
Sbjct: 965  ITIQRLSSYNETTIIQAHTRQQKGRKAMPHTSPPRGTTKHHLHL 1008


>SB_57086| Best HMM Match : PT (HMM E-Value=2.4)
          Length = 226

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = -1

Query: 459 HSCVHVPPGQ-TKSLRH-FTHPSAPQRTHSVPHR 364
           H C H    Q T    H +THP   Q TH  PH+
Sbjct: 165 HQCTHPYTHQYTHPYTHPYTHPYTHQYTHQYPHQ 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,219,266
Number of Sequences: 59808
Number of extensions: 449696
Number of successful extensions: 1449
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)