Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e15
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30560.1 68416.m03867 hypothetical protein                          28   5.7  
At5g54090.1 68418.m06734 DNA mismatch repair MutS family protein...    27   9.9  
At4g03690.1 68417.m00504 hypothetical protein very low similarit...    27   9.9  
At2g27880.1 68415.m03380 argonaute protein, putative / AGO, puta...    27   9.9  

>At3g30560.1 68416.m03867 hypothetical protein
          Length = 1473

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 384  CVAVRTGA*SALDSWSGRAAHAHTSVPLEPGSLGRTMTTSWAESAILVTLI-MSCWSEAR 560
            C+ V +   ++L    GR AH+   +PL P           ++ A LVT   +  W EA 
Sbjct: 1048 CLNVASSGIASLLLEGGRTAHSRFGIPLTPHETSTCNMERGSDLAELVTAAKLIIWDEAP 1107

Query: 561  VV-PYC 575
            ++  YC
Sbjct: 1108 MMSKYC 1113


>At5g54090.1 68418.m06734 DNA mismatch repair MutS family protein
           low similarity to SP|Q56239 DNA mismatch repair protein
           mutS {Thermus aquaticus; contains Pfam profile PF00488:
           MutS domain V
          Length = 795

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 462 PLEPGSLGRTMTTSWAESAILVTLIMSCWSEARVVPY 572
           PLE  +LG  +  S+AES  L+T+  +   E + + Y
Sbjct: 528 PLEGAALGMAILESFAESGSLLTMATTHHGELKTLKY 564


>At4g03690.1 68417.m00504 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 570

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 432 GRAAHAHTSVPLEPGSLGRTMTTSWAESAILVTLI-MSCWSEARVVPYCVSRWSQQRLRT 608
           GR AH+   +PL P            + A LVT   +  W EA ++     +   +RLR 
Sbjct: 259 GRTAHSRFGIPLTPHETSTCNIERGIDLAELVTAAKLIIWDEAPMMSKYCFKSLDKRLRD 318

Query: 609 LVA 617
           +++
Sbjct: 319 IIS 321


>At2g27880.1 68415.m03380 argonaute protein, putative / AGO,
           putative similar to SP|O04379 Argonaute protein (AGO1)
           {Arabidopsis thaliana}; contains Pfam profiles PF02170:
           PAZ domain, PF02171: Piwi domain
          Length = 997

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 569 RHHTRLRPAAHYKRDQDSRFG 507
           RHHTRL P  H  RD   + G
Sbjct: 848 RHHTRLFPEQHGNRDMTDKSG 868


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,464,001
Number of Sequences: 28952
Number of extensions: 273827
Number of successful extensions: 814
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)