Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e14
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   1.8  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   4.2  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    25   5.6  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   7.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.7  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    25   9.7  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 138 PKRKVAELKLRQLNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTES 281
           PK+   E K R  +P P K S+KKQK ++K K   +   +    ++ES
Sbjct: 51  PKKSKKEAK-RASSPEPSKKSVKKQK-KSKKKEESSSESESESSSSES 96


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 410 NLPSSYLFDYQEKLKELFSKH---GEINTVKRGPIIVT 514
           N P S L DYQ K+ E  S      E+NT++  P  V+
Sbjct: 255 NTPESLLIDYQSKIPEDLSSSLLPLELNTLQSTPTSVS 292


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +3

Query: 180 PSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTESLLKALRTLMSLRR 320
           P PL+  +  +  +N+P+     +++  +E  E++  + RTL   R+
Sbjct: 264 PVPLQSVMDSEHNENEPRALKRRKVQKLLEPDENIELSTRTLSQWRK 310


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 398 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGPIIVTELT 523
           L V+NL  + + + Q+ L+ELFSK G I +        TE++
Sbjct: 421 LFVKNLDDNIVGNTQQ-LEELFSKFGRIKSCTLASYPSTEIS 461


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 259 NLIRYAIVLFGLFWNFCFFN 200
           N  R  ++ FG+FW F  FN
Sbjct: 515 NFNRIWVIHFGMFWYFTAFN 534


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 141 KRKVAELKLRQLNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTESL 284
           K K  +   + ++ S  ++ LKK+KF           IKL  E T SL
Sbjct: 317 KDKAEKFSNKAVSSSTTEIKLKKKKFGKHRLPNNPLEIKLGDELTSSL 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,983
Number of Sequences: 5004
Number of extensions: 27792
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)