Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11e12
(695 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_33472| Best HMM Match : DUF1309 (HMM E-Value=3.1e-16) 54 1e-07
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 8e-07
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019) 35 0.055
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18) 30 2.1
SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26) 30 2.1
SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41) 29 2.7
SB_51274| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_26213| Best HMM Match : CITED (HMM E-Value=2.5) 29 4.8
SB_58714| Best HMM Match : Linker_histone (HMM E-Value=5.7e-15) 28 8.3
SB_40686| Best HMM Match : rve (HMM E-Value=0.00016) 28 8.3
SB_20679| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 73.3 bits (172), Expect = 2e-13
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Frame = +3
Query: 156 TVGHQQHDPSRYRSPMYSFXXXXXXXXXXXXXXXXYRIDR-VTRDGLVSAPAWSFGARFP 332
TVG + HD + +P +SF Y + +T+ G PA+S +R
Sbjct: 154 TVGKKNHDVRKTTNPAFSFGQRHRDFFTQISPGPKYMVPSGLTQCGKDGTPAFSLYSRAK 213
Query: 333 SRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGSG---- 500
+ + PGPG ++PE+ + +AP+YS G+R +A ++ P+PN+Y+L +G
Sbjct: 214 EKNLSHVPGPGEYSPEKHSIPHERKAPSYSFGSRTKYAQKQITPSPNSYSLPALTGPKVV 273
Query: 501 ----SPAYTMGARV---GF-QAKAKSPGPAVYFQRDANVYRTKPPMYS 620
+ AY++ R GF + K+PGP Y + YR + YS
Sbjct: 274 NKTSAAAYSLTGRSNNGGFSEDLQKTPGPGTYKVTSPDKYRKRMAAYS 321
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Frame = +3
Query: 153 TTVGHQQHDPSRYRSPMYSFXXXXXXXXXXXXXXXXYRI--DRVTRDGLVSAPAWSFGA- 323
TT + HD +R R P +SF + R+TR G P +S G
Sbjct: 31 TTCNYNMHDVTRNRRPAFSFGNKHMHALTNDCSPGPMYLPDSRITRVGAEGNPKYSLGGT 90
Query: 324 -RFPSRAATRAPGP 362
R+ + R PGP
Sbjct: 91 DRYAKKTILRPPGP 104
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 318 GARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAR 434
G F +T+ PGPG H+PE+ M AP S G +
Sbjct: 324 GRNFMPGDSTQKPGPGQHSPEKV-VMHQKAAPKVSFGIK 361
>SB_33472| Best HMM Match : DUF1309 (HMM E-Value=3.1e-16)
Length = 97
Score = 54.0 bits (124), Expect = 1e-07
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +3
Query: 348 RAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGSGSPAYTMGAR 527
+ P PG+++PE+ P + APAYSMG R R PN Y+ S S + T A
Sbjct: 4 KTPAPGAYSPEKVHPQGERHAPAYSMGGR-----TRYRKLPNKYS----SASYSMTGRAT 54
Query: 528 VGFQAK--AKSPGPAVYFQRDANVYRTKPPMYS 620
G ++ AK+PGP Y N Y+ + P YS
Sbjct: 55 TGSFSEDLAKAPGPGKYNTTIPNTYKNRQPQYS 87
>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 562
Score = 51.2 bits (117), Expect = 8e-07
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 2/120 (1%)
Frame = +3
Query: 162 GHQQHDPSRYRSPMYSFXXXXXXXXXXXXXXXXYRID-RVTRDGLVSAPAWSFGARFPSR 338
G+ HDP +++ P +SF Y I R+TR G PA++ R
Sbjct: 348 GYNDHDPRKHKKPAWSFGLKLGLKSQNVGPGPAYLIPARITRTGTDGTPAYTLHDRTQLN 407
Query: 339 AATRAPGPGSHAPERCPPMKDPRAPAYSM-GARLGFAPRRAGPAPNAYALKLGSGSPAYT 515
A P PG++ P R PAYSM G P P A++ + G +T
Sbjct: 408 KAFSTPAPGTYKVHN-PDYNKKRMPAYSMNGRNYMTGDNTLKPGPGAHSPEKGGSQSLFT 466
Score = 45.6 bits (103), Expect = 4e-05
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Frame = +3
Query: 339 AATRAPGPGSHA-PERCPPMK-DPRA---PAYSMGARLGFAPRRAGPAPNAYAL-----K 488
A R PGP + P C DPR PA+S G +LG + GP P AY + +
Sbjct: 331 AMFRGPGPAKYRLPGGCGYNDHDPRKHKKPAWSFGLKLGLKSQNVGPGP-AYLIPARITR 389
Query: 489 LGS-GSPAYTMGARVGFQAKAKSPGPAVYFQRDANVYRTKPPMYS 620
G+ G+PAYT+ R +P P Y + + + + P YS
Sbjct: 390 TGTDGTPAYTLHDRTQLNKAFSTPAPGTYKVHNPDYNKKRMPAYS 434
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Frame = +3
Query: 303 PAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYA 482
PAWSFG + ++ PGP P R PAY++ R + PAP Y
Sbjct: 360 PAWSFGLKLGLKSQNVGPGPAYLIPARITRTGTDGTPAYTLHDRTQLNKAFSTPAPGTYK 419
Query: 483 LKLGSGS----PAYTMGARVGFQA-KAKSPGPAVY 572
+ + PAY+M R PGP +
Sbjct: 420 VHNPDYNKKRMPAYSMNGRNYMTGDNTLKPGPGAH 454
>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
Length = 1008
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 342 ATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAP 470
+T +PG H+ PPM AP+++ RLG +P R P P
Sbjct: 38 STMSPGTQDHSRTPTPPMSVQNAPSWNQSPRLGMSPARP-PVP 79
>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -1
Query: 443 EAESSAHGVGRSAGVLHRGAALGSVRARPWGASSRARRKPGAEAPGGRGHESVPRDPVDA 264
+ SS HG S + R A+ S + R + S +R KP P G+ SV R P D+
Sbjct: 173 KTSSSGHGQHSSRTAVRRSASFSSSQRRT--SESESRSKPAVGKPRPVGNASVVRSPADS 230
>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
Length = 1085
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 357 GPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGP 464
GP +AP R P P PA+ MGAR AP P
Sbjct: 962 GPRHYAPPRAPQSYAPPPPAHFMGARYP-APYHRAP 996
>SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)
Length = 307
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/68 (29%), Positives = 28/68 (41%)
Frame = +3
Query: 303 PAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYA 482
P W+ + P + RA P APE PP+ RA ++ G R P P N +
Sbjct: 63 PTWTAPQQDPPVDSARARSPPWTAPEPNPPVDSARARSF-RGQRKSQIPTWTAPELNPHV 121
Query: 483 LKLGSGSP 506
S +P
Sbjct: 122 DSATSRNP 129
>SB_17040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 511 IPWALGSGSKLKPSLRDLRSTSRGTLT 591
+P A G+GSKL P L LR+ G L+
Sbjct: 302 VPKAYGTGSKLSPGLDSLRARQSGMLS 328
>SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41)
Length = 376
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 285 DGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARL 437
+ L + P W+ +P + +A P A ER PP D R G RL
Sbjct: 143 ENLRTIPPWTAPEPYPPVDSAKAGPPMDRARERSPPHVDSRRARSPRGRRL 193
>SB_51274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 402 PRAPAYSMGARLGFAPRRAGPAPNAYALKLGSG 500
P P+Y G +L F+ AP+ AL LG+G
Sbjct: 221 PGYPSYGHGTQLKFSRHMTSSAPDFNALSLGNG 253
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/82 (28%), Positives = 30/82 (36%)
Frame = +3
Query: 336 RAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGSGSPAYT 515
R TR P PG P R PP RAP R + P P ++ ++ YT
Sbjct: 311 RPPTRIPPPGMGPPPRIPP-PPIRAPVDVYPPRAPQGASQTPPYPGSHYSRVPPPDGPYT 369
Query: 516 MGARVGFQAKAKSPGPAVYFQR 581
G + A+ P P R
Sbjct: 370 RALPPG-EPYARMPPPGATHPR 390
>SB_26213| Best HMM Match : CITED (HMM E-Value=2.5)
Length = 172
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Frame = +3
Query: 324 RFPSRAATRAPGPGSHAPERCPPMKDPRA-PAYSMGARLGFAPRRAGPAPNAYALKLGSG 500
R PSR + + PG E P PR A+SM A + G + ALK G
Sbjct: 62 RVPSRRRSNSSAPGKVHAEGAAPAPSPRTHAAHSMTAAEPASAPGPGEKGDHTALKAGLS 121
Query: 501 SPAYTMGARVGFQAKAKSPGP 563
A + F A SP P
Sbjct: 122 ELAPRARSSPSFFPMALSPIP 142
>SB_58714| Best HMM Match : Linker_histone (HMM E-Value=5.7e-15)
Length = 169
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +3
Query: 360 PGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGSGSPAYTMGARVGFQ 539
P AP++ P K + PA S+ +AG P A K + PA A+ G +
Sbjct: 87 PAKAAPKKTPAKKSAKKPAPSVKKTAPNDKTKAGETPKAAGKK--TAKPA---KAKRGKK 141
Query: 540 AKAKSP 557
+KA SP
Sbjct: 142 SKAASP 147
>SB_40686| Best HMM Match : rve (HMM E-Value=0.00016)
Length = 1586
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Frame = +3
Query: 312 SFGARFPSRAATRAPGPGSHAPERCPPMKDPRAP----AYSMGARLGFAPRRAGPAPNAY 479
S G R S + + A PG ++ P + PR P A R+ P A P Y
Sbjct: 450 SNGIRGVSSSLSSADEPGMSVSDKRDPQRTPRTPLGLKAERTVHRVTLNPSTASPGETIY 509
Query: 480 --ALKLGSGSPAYTMGARVG 533
LKL G RVG
Sbjct: 510 VAVLKLSEGVTLVPGSLRVG 529
>SB_20679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/86 (25%), Positives = 33/86 (38%)
Frame = +3
Query: 300 APAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAY 479
+P + G PS A GP S P +D +AP Y+ R+ R AG +A
Sbjct: 2 SPTAAMGKEPPSPTAAMGKGPPSPIAAMEGPSRDSQAP-YAKSCRVS-ESRPAGKRESAP 59
Query: 480 ALKLGSGSPAYTMGARVGFQAKAKSP 557
+K + QA + +P
Sbjct: 60 HIKASQSGRTAATALLIHCQATSSAP 85
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 330 PSRAATRAPGPGSHAPERCPPMKDP 404
P +TR+P GSH+P PP P
Sbjct: 2303 PGSNSTRSPSTGSHSPSVPPPPPPP 2327
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,325,625
Number of Sequences: 59808
Number of extensions: 327381
Number of successful extensions: 1224
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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