Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11e12
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 30 1.3
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7) 29 2.9
At5g35230.1 68418.m04177 hypothetical protein 29 2.9
At2g47210.1 68415.m05896 myb family transcription factor contain... 29 2.9
At4g04990.1 68417.m00728 expressed protein contains Pfam domain ... 29 3.9
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 28 5.1
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 28 5.1
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 28 6.8
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 28 6.8
At3g28550.1 68416.m03565 proline-rich extensin-like family prote... 28 6.8
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 28 6.8
At2g01860.1 68415.m00119 pentatricopeptide (PPR) repeat-containi... 27 9.0
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 348 RAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRA-GPAPNAYALKLGSGSPAYTMGA 524
++P P SH+P P +PA++ AP + AP+ S SPA++
Sbjct: 212 KSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSH 271
Query: 525 RVGFQAKAKSPGPA 566
A KSP P+
Sbjct: 272 S---PATPKSPSPS 282
>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
Length = 130
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = +3
Query: 333 SRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNA 476
S + AP P S AP PP P P S G + P PNA
Sbjct: 62 SSPPSSAPSPSSDAPTASPPA--PEGPGVSPGELAPTPSDASAPPPNA 107
>At5g35230.1 68418.m04177 hypothetical protein
Length = 366
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 413 RSAGVLHRGAALGSVRARPWGASSRARRKPGAEAPG-GRGHE 291
R AGV+ A G+ R R +SR R + G APG GRG E
Sbjct: 72 RPAGVVETEAVFGAGRRRRREGASRGRGR-GRAAPGRGRGRE 112
>At2g47210.1 68415.m05896 myb family transcription factor contains
Pfam profile: PF00249 myb DNA-binding domain
Length = 441
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 282 RDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPR 407
+D + + +SFGA P + + GPG A P K PR
Sbjct: 393 KDRVFAPDPFSFGAERPIKKEQKRKGPGRQADTPSPAHKRPR 434
>At4g04990.1 68417.m00728 expressed protein contains Pfam domain
PF05553: Cotton fiber expressed protein
Length = 303
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 285 DGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPA 416
D +S +W +R PSRA P S +P + P +PA
Sbjct: 197 DTKMSTSSWPLPSRSPSRARRPTPSLSSLSPSSSRARRPPSSPA 240
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 330 PSRAATRAPGPGSHAPERCPP--MKDPR-APAYSMGARLGFAPR-RAGPA 467
P R AP PGS P+ PP K PR P S+G + APR +GPA
Sbjct: 385 PPRPPPPAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPK---APRPPSGPA 431
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 330 PSRAATRAPGPGSHAPERCPP--MKDPR-APAYSMGARLGFAPR-RAGPA 467
P R AP PGS P+ PP K PR P S+G + APR +GPA
Sbjct: 385 PPRPPPPAPPPGSGGPKPPPPPGPKGPRPPPPMSLGPK---APRPPSGPA 431
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +3
Query: 351 APGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGSGSPAYTM 518
AP P H PP P APA S+ R + P+ + L+ G PAY +
Sbjct: 1156 APPPSDHC---LPPPTAPLAPAQSIALPPSSITRPSMPSHPSLPLQPGFAPPAYPL 1208
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 297 SAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPR 407
SAPA S P + P P AP++ PP P+
Sbjct: 69 SAPAISISPSTPIPSTPSTPSPPPPAPKKSPPPPTPK 105
>At3g28550.1 68416.m03565 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1018
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Frame = +3
Query: 351 APGPGSHAPERCPPM--KDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGSGSPAYTMGA 524
+P P H PP P P YS ++ + ++ P P Y+ P Y+
Sbjct: 670 SPSPKVHYKSPPPPYVYSSPPPPYYSPSPKVHY---KSPPPPYVYS---SPPPPYYSPSP 723
Query: 525 RVGFQAKA-----KSPGPAVYFQRDANVYRTKPPMY 617
+V +++ SP P Y VY++ PP Y
Sbjct: 724 KVVYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPY 759
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Frame = +3
Query: 351 APGPGSHAPERCPPM--KDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGSGSPAYTMGA 524
+P P H PP P P YS ++ + ++ P P Y+ P Y+
Sbjct: 695 SPSPKVHYKSPPPPYVYSSPPPPYYSPSPKVVY---KSPPPPYVYS---SPPPPYYSPSP 748
Query: 525 RVGFQAKA-----KSPGPAVYFQRDANVYRTKPPMY 617
+V +++ SP P Y VY++ PP Y
Sbjct: 749 KVVYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPY 784
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +3
Query: 297 SAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNA 476
S P+ S + PS + +P P S +P PP +P S+ L +P + P+ +A
Sbjct: 39 SPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSPS-SA 97
Query: 477 YALKLGSGSP 506
L SP
Sbjct: 98 PPSSLSPSSP 107
>At2g01860.1 68415.m00119 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 486
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 134 RRVPAAHDGRPPAARPIALPEPHVL 208
+R+P D +P RP+ LP+PH L
Sbjct: 107 KRIPQKPD-KPSRVRPLPLPQPHKL 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,880,128
Number of Sequences: 28952
Number of extensions: 231354
Number of successful extensions: 815
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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