Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e11
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34207| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_30649| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-24)               27   9.4  

>SB_34207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -2

Query: 254 VLCTQRTETVLRFLSIKIYFMK---IVRQDLLFPHSNPSSEFL 135
           V+  + T  ++ FL I + F+    + +Q +LFPH  PS E +
Sbjct: 112 VMIGRMTIDMMYFLVIMVVFLLAYGVAQQAILFPHEKPSWELI 154


>SB_30649| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-24)
          Length = 463

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = -2

Query: 410 VTFNVNDVSTVECC*RRLEA*PKTWGGVLRSVLDWIWKSNSFPVD 276
           ++++ N++  V+CC   ++     +G +L  ++   W  + FPV+
Sbjct: 62  ISWSENELELVQCCNSSVKTNVYVFGTLLYEIMTGRWPFSHFPVE 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,454,543
Number of Sequences: 59808
Number of extensions: 363469
Number of successful extensions: 1019
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)