Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e11
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43890.1 68416.m04698 DC1 domain-containing protein contains ...    28   4.4  
At1g68600.1 68414.m07839 expressed protein contains Pfam profile...    27   7.7  
At1g48270.1 68414.m05392 G protein coupled receptor-related iden...    27   7.7  

>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 432 NSMSVSRCNI*RKRCFHC*VLLTTTRSLAKDLGWCSQKCF 313
           NSMS   C   + RC    +L T   S  ++  +CS+ CF
Sbjct: 620 NSMSRPLCKQCKSRCIFPVILETWNESCLRNEYYCSEACF 659


>At1g68600.1 68414.m07839 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 537

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = +3

Query: 351 GFESSLATLNSGNIVYVKCYIGLLTSSLTQIH*ILWADKXXXXXNSLY*INYMSSLYFDR 530
           GF  +L T+ +G +      + +L     ++  I+          + Y   Y S   ++ 
Sbjct: 109 GFNRALGTMLAGGLALGVAQLSVLAGEFEEV--IIVICIFLAGFGASYLKLYASMKPYEY 166

Query: 531 YFRIYRLTYVIVL 569
            FR+++LTY IVL
Sbjct: 167 AFRVFKLTYCIVL 179


>At1g48270.1 68414.m05392 G protein coupled receptor-related
           identical to putative G protein coupled receptor
           GI:2104224 from [Arabidopsis thaliana]
          Length = 326

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 146 SEFLQCCSCLKHPAAKLKKKQIFYVAIK*IL-NFFTVV 36
           S F+  C CL     K   K +FY+A+  +L +FF +V
Sbjct: 34  SAFIVLCYCLFKELRKFSFKLVFYLALSDMLCSFFLIV 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,999,902
Number of Sequences: 28952
Number of extensions: 260286
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)