Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e10
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|c...    99   7e-22
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    29   0.48 
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    29   0.83 
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   1.9  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   7.8  

>SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 98.7 bits (235), Expect = 7e-22
 Identities = 54/139 (38%), Positives = 80/139 (57%), Gaps = 4/139 (2%)
 Frame = +1

Query: 127 AEEFGNDETLEHLWAAKAIEYSDIHFNVLCSVDMRWLQLTPHDDLIYTTFRQDFPDLN-- 300
           AE   N   +E  +A KA+E + I++++L       L+LT +DD I+      FP+    
Sbjct: 8   AENAENAAEIEMQFAVKAVEQAQIYWSLLEMRKGSELKLTKYDDEIFEDLINTFPEFKDP 67

Query: 301 --VSNVKEHEIKSNVNKVKWRMFCEKFKNIVEDYSFGTLLRVDCKGDYSERNTMLVPRVQ 474
              S V E E+KS   K  WR F  +++  V+DY+FGTLLR+    +Y +  T+ VPR+Q
Sbjct: 68  KTASFVNEDEMKSAKGKAAWRPFLMRYEKKVDDYNFGTLLRIKNTDEYEQETTIFVPRMQ 127

Query: 475 FYAIEIARNRENLNNEVKR 531
           F A EIARNR  LN+ +K+
Sbjct: 128 FLAYEIARNRYGLNDWIKK 146


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +1

Query: 139 GNDETLEHLWAAKAIEYSDIHFNVLCSVDMRWLQLT 246
           GND+  + +WAA A++ ++ +F+   S +  WL+LT
Sbjct: 108 GNDD--QGMWAAAAMDAAEANFSPPNSTEHSWLELT 141


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 199 HFNVLCSVDMRWLQLTPHDDLIYTTFRQDFPDLNVSNVKEHEIK 330
           HFN   S D      +PH+ L+ TTF+  FP ++V +   + +K
Sbjct: 144 HFNQNSSKD------SPHEALLTTTFQNMFPPISVQHTNINSVK 181


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 433 DYSERNTMLVPRVQFYAIEIARNRENLNNEVKRLFKCS 546
           +   +N M    +  Y  E+  N+E LNNE  +L+ C+
Sbjct: 107 ELERQNCMREDGLVKYTNELLLNKETLNNEALKLYSCA 144


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = +1

Query: 244 TPHDDLIYTTFRQDFPDLNVSNVKEHEIKSNVNKVKWRMFCEKFKNIVEDYSFGTLLRVD 423
           T  D+LIY  F  DF  LNVS++    +  +    K R   +K K IV   S  T LR +
Sbjct: 40  TIDDELIYNPFYHDFGPLNVSHLIRFAVIVHGIMGKHRQ-AKKSKAIVLYSSTDTRLRAN 98


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 122 DRPRNLEMMRPWNICGPPKL*NTVTYI 202
           +R   LE ++ +N C PPK  N +T I
Sbjct: 128 NRQNVLERVKVFNSCSPPKPTNPITII 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,784
Number of Sequences: 5004
Number of extensions: 61402
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)