Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e10
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22204| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.054
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_36345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_49993| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-13)                 29   3.5  
SB_44792| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-13)                 29   3.5  
SB_18552| Best HMM Match : DLH (HMM E-Value=0.037)                     29   3.5  
SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                29   4.7  
SB_12795| Best HMM Match : Collagen (HMM E-Value=0.04)                 29   4.7  
SB_46259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_36346| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  

>SB_22204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 421 DCKGDYSERNTMLVPRVQFYAIEIARNRENLN 516
           D   +  E+    + +++FYAIEIARNR++LN
Sbjct: 31  DATPENEEKKVKDITKIEFYAIEIARNRQHLN 62



 Score = 32.3 bits (70), Expect = 0.38
 Identities = 12/17 (70%), Positives = 17/17 (100%)
 Frame = +1

Query: 466 RVQFYAIEIARNRENLN 516
           +++FYAIEIARNR++LN
Sbjct: 3   KIEFYAIEIARNRQHLN 19


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 271  TFRQDFPDLNVSNVKEHEIKSNVNKVKWRMFCEKFKN-IVEDYSFGTLLRVDCKGDYSER 447
            T  QD P  + SN+  + + S   +V WR   +K++N IV  Y      R D  G+Y  R
Sbjct: 1679 TTAQDVPAASPSNITANNVSSTELEVIWRPVPQKYQNGIVLGYKV-MYRRAD--GEYPIR 1735

Query: 448  NTML 459
            N  +
Sbjct: 1736 NVTI 1739


>SB_36345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 460 PTSCCALNNLPCSPHVAKYQSCNL 389
           P  CC  N + CSP + +Y +C+L
Sbjct: 35  PNKCCLFNRI-CSPKLPQYSTCHL 57


>SB_49993| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-13)
          Length = 331

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 354 PLYFIYVALYFMFFDIGYIEIWKV 283
           PLY ++V LYF    +G++ +W++
Sbjct: 190 PLYGVFVVLYFAIAALGFMILWRL 213


>SB_44792| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-13)
          Length = 331

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 354 PLYFIYVALYFMFFDIGYIEIWKV 283
           PLY ++V LYF    +G++ +W++
Sbjct: 190 PLYGVFVVLYFAIAALGFMILWRL 213


>SB_18552| Best HMM Match : DLH (HMM E-Value=0.037)
          Length = 388

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +1

Query: 376 KNIVEDYSFGTLLRVDCKGDYSERNTMLVPRVQFYAIE 489
           +NI+  +S+G +L+   +GD S  N+++VP +  Y  +
Sbjct: 138 RNILVGHSYGIVLKNWMEGDVSFHNSLMVPVLLIYGAQ 175


>SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 660

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 68  NIKYHIETFCKPKWRCCLDRP 130
           ++ Y +E FCKPK + CL  P
Sbjct: 103 SVSYAVEQFCKPKDKLCLRGP 123


>SB_12795| Best HMM Match : Collagen (HMM E-Value=0.04)
          Length = 181

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 68  NIKYHIETFCKPKWRCCLDRP 130
           ++ Y +E FCKPK + CL  P
Sbjct: 103 SVSYAVEQFCKPKDKLCLRGP 123


>SB_46259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = -3

Query: 260 RSSCGVS*SHLMSTEHNTLKCMSLYSIALAAHRCSRVSSFPNSSAGRDS 114
           RSSCG++   L   +HN L   SLY+I      CS V  F ++ +GR S
Sbjct: 60  RSSCGMA--WLNVKKHNLLH--SLYNITRYTMACSYVLLFDSNLSGRRS 104


>SB_36346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 460 PTSCCALNNLPCSPHVAKYQSCNL 389
           P  CC  N + CSP +  Y +C+L
Sbjct: 35  PNKCCLFNRI-CSPKLPHYSTCHL 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,188,023
Number of Sequences: 59808
Number of extensions: 441998
Number of successful extensions: 1169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)