Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e10
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49160.1 68416.m05373 pyruvate kinase family protein similar ...    29   2.2  
At5g22370.1 68418.m02610 ATP-binding family protein contains Pfa...    29   3.8  
At2g20020.1 68415.m02340 expressed protein                             28   5.0  
At5g52280.1 68418.m06488 protein transport protein-related low s...    28   6.7  
At5g61790.1 68418.m07754 calnexin 1 (CNX1) identical to calnexin...    27   8.8  
At5g07340.1 68418.m00838 calnexin, putative identical to calnexi...    27   8.8  

>At3g49160.1 68416.m05373 pyruvate kinase family protein similar to
           SP|Q92122 Pyruvate kinase, muscle isozyme (EC 2.7.1.40)
           (Cytosolic thyroid hormone binding protein) (CTHBP)
           {Xenopus laevis}; contains Pfam profile PF00224:
           Pyruvate kinase, barrel domain
          Length = 710

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 181 IEYSDIHFNVLCSVDMRWLQ-LTPHDDLIYTTFRQDFPDLNV 303
           I  SDIHF  L S D++ L  +  H D++  +F +D  D+ V
Sbjct: 524 IPQSDIHFKGLTSKDIKDLDYVASHADMVGISFIRDVHDITV 565


>At5g22370.1 68418.m02610 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 291

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +1

Query: 199 HFNVLCSVDMRWLQLTPHDDLIYTT-FRQDFPDLNVSNVKEHEIKSNVNKVKWRMFCEKF 375
           H NVL  +D+    +  +  L +   F  D  DL+     EH +  +    K+R   ++ 
Sbjct: 168 HVNVLSKIDL----IGSYGKLAFNLDFYTDVQDLSYL---EHHLSQDPRSAKYRKLTKEL 220

Query: 376 KNIVEDYSFGTLLRVD 423
            +++EDYS      +D
Sbjct: 221 CSVIEDYSLVNFTTLD 236


>At2g20020.1 68415.m02340 expressed protein
          Length = 701

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 358 MFCEKFKNIVEDYSFGTLLRVDCKG 432
           ++C+  KN+ E +    L+R+DC+G
Sbjct: 387 VYCDLVKNVKEAFEVCELVRIDCQG 411


>At5g52280.1 68418.m06488 protein transport protein-related low
           similarity to  SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 853

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 412 LRVDCKGDYSERNTMLVPRVQFYAIEIARNRENLNNEVKRLFKCSSKNNTQSQE 573
           L+VD +    E   +L  R++  + E     ENL+     L  C +KN++  +E
Sbjct: 762 LKVDIRRKEEEMTKILDARMEARSQENGHKEENLSKLSDELAYCKNKNSSMERE 815


>At5g61790.1 68418.m07754 calnexin 1 (CNX1) identical to calnexin
           homolog 1, Arabidopsis thaliana, EMBL:AT08315
           [SP|P29402]
          Length = 530

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 178 LWRPTDVPGSHHFQIPRP 125
           +W+P D+P   +F++ RP
Sbjct: 343 IWKPRDIPNPDYFELDRP 360


>At5g07340.1 68418.m00838 calnexin, putative identical to calnexin
           homolog 2 from Arabidopsis thaliana [SP|Q38798], strong
           similarity to calnexin homolog 1, Arabidopsis thaliana,
           EMBL:AT08315 [SP|P29402]; contains Pfam profile PF00262
           calreticulin family
          Length = 532

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 178 LWRPTDVPGSHHFQIPRP 125
           +W+P D+P   +F++ RP
Sbjct: 345 IWKPRDIPNPDYFELERP 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,789,928
Number of Sequences: 28952
Number of extensions: 311180
Number of successful extensions: 844
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)