Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11e08
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_2799| Best HMM Match : rve (HMM E-Value=7.8e-26) 30 1.4
SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37) 29 2.5
SB_3278| Best HMM Match : ORC2 (HMM E-Value=0) 29 2.5
SB_17197| Best HMM Match : UPF0183 (HMM E-Value=1.7e-36) 29 4.4
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.4
SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0) 29 4.4
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 28 5.8
SB_50536| Best HMM Match : Mycobact_memb (HMM E-Value=5.3) 28 5.8
SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09) 28 5.8
SB_50167| Best HMM Match : PRP1_N (HMM E-Value=0.87) 28 7.6
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36) 28 7.6
SB_28977| Best HMM Match : AAA (HMM E-Value=0) 28 7.6
SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 147 FYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSTRFD 290
FYY+H+ S L++ + P+FA + + +++ +LP F R D
Sbjct: 103 FYYDHLMSRDGSKPLRVRSMVGLVPLFACLVLEDEFVQKLPGFKKRLD 150
>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2937
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 638 VSTASSTALA-SWIVVHCYLLHHLHQKNNLAIHGF*FSLTDFRFHPFFWSHPPP 480
+ST T A ++V+H L HH +N+ H + + + HP +H P
Sbjct: 2694 ISTRHVTLQAIPYLVIHAVLPHHAQSRNSDWCHDYAMLCSHYGLHPLTCNHDNP 2747
>SB_2799| Best HMM Match : rve (HMM E-Value=7.8e-26)
Length = 1058
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 449 KKKSADGNSGA-EEGGSKKKDENENQLKRTKSRELRGCSSGEDGATGSNGP 598
+++ N G+ EEGG K+D+ E+ L + S L+ +S G +G P
Sbjct: 60 EEEGEGSNDGSKEEGGEGKEDDQESYLPSSSSDLLQSGASSSLGGSGQTTP 110
>SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37)
Length = 292
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 527 LTDFRFHPFFWSHPPPLRCFHRPTFFSKTVVL 432
L+D R HPFF +H PP H F T++L
Sbjct: 1 LSDTRIHPFFATHEPPRVTTH--GFSGATIIL 30
>SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)
Length = 459
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 344 RRVCDAPRPARHTSHDSVTLI*CHNGSHLATLRF*KKKSADGNSGA-EEGGSKKKDENEN 520
RR+ P+P + S DS H H T + + DGN +EG S K DE+EN
Sbjct: 46 RRLPPRPQPIKPASKDSDDDTGSHTSGHENT----EDDTDDGNDDDNKEGSSGKDDESEN 101
Query: 521 Q 523
+
Sbjct: 102 E 102
>SB_17197| Best HMM Match : UPF0183 (HMM E-Value=1.7e-36)
Length = 397
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 500 FWSHPPPLRCFHRPTFFSKTVVLRGG 423
+W+ P PL+CFH F V++ G
Sbjct: 91 YWAPPLPLQCFHGNCFAESVDVIKDG 116
>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1080
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 449 KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRGCSSGEDGATGSN 592
KK + +GN E+G K KD+ E K E+ S ++ + N
Sbjct: 539 KKDTEEGNKEKEKGDDKAKDKTEESKDGEKKEEIGDKKSDKEESAEKN 586
>SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)
Length = 584
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 449 KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRGCSSG 568
KKKSA+ +G ++ KK++ + K KS++ + +G
Sbjct: 441 KKKSANAENGGDKASKAKKEKKGDDDKEAKSKKEKKTKNG 480
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 482 EEGGSKKKDENENQLKRTKSRELRGCSSGEDGATGSNGPLSSL 610
E+G SK + E+EN++ R++ LRG +S G+ G L SL
Sbjct: 129 EKGRSKTRPEDENRMHRSR---LRG-NSASQSVGGTGGGLPSL 167
>SB_50536| Best HMM Match : Mycobact_memb (HMM E-Value=5.3)
Length = 462
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 233 GQLSSEMAYKTASFFNKVRFATCAVPALVLNRVHRPVRRVC 355
G+ E+A TA +V +A C P LV +++ V RVC
Sbjct: 268 GKQIPELAVSTAYEVMRVFWAVCRYPVLVRVKMNWSVHRVC 308
>SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)
Length = 564
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 278 NKVRFATCAVPALVLNRVHRPVRRVCDAPRPARHTSH 388
N RFA P + V R+ +AP P+R+TSH
Sbjct: 13 NSPRFANAPHPTPLGTLVTNNSPRLANAPHPSRYTSH 49
>SB_50167| Best HMM Match : PRP1_N (HMM E-Value=0.87)
Length = 267
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = +2
Query: 500 KKDENENQLKRTKSRELR----GCSSGEDGATGSNG 595
KK+ E +K KS+ + GCSSG D A NG
Sbjct: 131 KKEFGEEMVKELKSKHKKIEDLGCSSGVDSALNLNG 166
>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
Length = 885
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -1
Query: 382 RMSCRAGGIAHTADRAVDTVED*SWHGTGSESNLVEKTGSLVSHFA*KLTEANTGA 215
R+SC + AD+ + E+ + H +E +EK+ ++ +F+ K GA
Sbjct: 637 RLSCEIASLQFDADKFANEAEEKAQHCLKAEPAFLEKSWKVLDYFSFKSVRNLCGA 692
>SB_28977| Best HMM Match : AAA (HMM E-Value=0)
Length = 442
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 449 KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRG 556
K A G+S + GG K D+ ++ +S++L+G
Sbjct: 46 KPVKAGGSSSTKTGGGKDDDDEDSDSDNAESKKLKG 81
>SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 458 SADGNSGAEEGGSKKKDENENQL-KRTKSRELRGCSSG 568
++DG +G E+ S+K+D N ++L + R RG S G
Sbjct: 54 NSDGGTGDEDSLSRKEDRNRSKLGPFRRPRSKRGLSPG 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,877,151
Number of Sequences: 59808
Number of extensions: 417282
Number of successful extensions: 1738
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1734
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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