Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e08
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    33   0.18 
AF400666-1|AAL28025.1|  481|Caenorhabditis elegans CUX-7 protein.      30   1.2  
AC006605-6|AAK85446.2|  495|Caenorhabditis elegans Clk-2 upstrea...    30   1.2  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z81104-3|CAD89749.1|  660|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AC006665-2|AAF39904.1|  341|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    28   5.0  
U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +2

Query: 455 KSADGNSGAEEGGSKKKDENENQLKRTKSRELRGCSSGEDGAT 583
           +S DG+ G EEG S KK++  N LKR    E  G S  +DG++
Sbjct: 110 QSRDGDEGEEEG-SDKKEKKGNPLKREHGDEGEG-SGNQDGSS 150


>AF400666-1|AAL28025.1|  481|Caenorhabditis elegans CUX-7 protein.
          Length = 481

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 473 SGAEEGGSKKKDENENQLKRTKSRELRGCSSGEDGATGSNGPLS 604
           SGAE+   KK+D+N+   +R  +R     SS ED  + S+ P S
Sbjct: 427 SGAEK--DKKRDKNKTSRRRRTNRHDTSSSSSEDSDSPSDSPHS 468


>AC006605-6|AAK85446.2|  495|Caenorhabditis elegans Clk-2 upstream,
           human gene xe7related protein 7 protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 473 SGAEEGGSKKKDENENQLKRTKSRELRGCSSGEDGATGSNGPLS 604
           SGAE+   KK+D+N+   +R  +R     SS ED  + S+ P S
Sbjct: 427 SGAEK--DKKRDKNKTSRRRRTNRHDTSSSSSEDSDSPSDSPHS 468


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
            protein Y32B12B.4 protein.
          Length = 1528

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 408  NVTMVATSQHYGFRKKSRPMETAERRRVAPKKRMKTKIS*RELKAV 545
            NV +VA S    +RK+ +   T + + VAPKKR  + +    L AV
Sbjct: 1285 NVPVVAQSARRAYRKRIKT--TTDAKTVAPKKRSSSSMRSESLPAV 1328


>Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical
           protein R107.4d protein.
          Length = 817

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 443 F*KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRG 556
           F KK+  +GN G +    +   ENE Q KR K R+  G
Sbjct: 777 FKKKRRENGNEGGDNDVCRICCENERQEKREKKRKSSG 814


>Z81104-3|CAD89749.1|  660|Caenorhabditis elegans Hypothetical
           protein M199.5 protein.
          Length = 660

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +2

Query: 455 KSADGNSGAEEGGSKKKDENENQLKRTKSRELRGCSSGEDGATGSNG 595
           K ADG  GA+     K D+ E  L   K         G DGA G+NG
Sbjct: 327 KGADGAKGADGTPGSKGDKGEKGLDGPKG------DKGADGAKGANG 367


>AC006665-2|AAF39904.1|  341|Caenorhabditis elegans Hypothetical
           protein H27M09.5 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 449 KKKSADGNSGAE-EGGSKKKDENENQLKRTKSRELRGCSSG 568
           K+   D N+G++ + GSKKK   +  +K ++S+  +  SSG
Sbjct: 75  KEDGNDHNNGSDRKEGSKKKKSRQKSMKSSRSKRKKRHSSG 115


>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 449 KKKSADGNSGAEEGGSKKKD--ENENQLKRTKSRELRGCSSGED 574
           KK+      G E+   KK+D  ENEN  K+ KS++ +   S ED
Sbjct: 80  KKEEEKKEDGHEKKEDKKEDKKENENDEKKEKSKDDKKEESKED 123


>U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical
           protein D1014.6 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 503 FFWSHPPPLRCFHRPTFFSK-TVVLRGGYHCDIRSKSLNRVTYVL 372
           F W +     C HR  FFSK T V+      ++RS+S   +  +L
Sbjct: 282 FMWHNAQINDCHHRSKFFSKWTAVIDIDERIEMRSESFKTIISLL 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,828,321
Number of Sequences: 27780
Number of extensions: 306150
Number of successful extensions: 976
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)