Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e08
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin; gl...    34   0.095
At1g69580.1 68414.m08003 myb family transcription factor contain...    31   0.67 
At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger) fa...    29   2.0  
At1g09790.1 68414.m01098 phytochelatin synthetase-related contai...    29   2.0  
At2g44430.1 68415.m05525 DNA-binding bromodomain-containing prot...    29   3.6  
At2g17705.1 68415.m02051 expressed protein                             29   3.6  
At1g65440.1 68414.m07424 glycine-rich protein                          28   4.7  
At1g54460.1 68414.m06212 expressed protein                             28   4.7  
At5g56040.1 68418.m06992 leucine-rich repeat protein kinase, put...    28   6.2  
At4g04130.1 68417.m00583 Ulp1 protease family protein contains P...    28   6.2  
At1g68370.1 68414.m07809 gravity-responsive protein / altered re...    28   6.2  
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    27   8.2  
At2g19490.1 68415.m02278 recA family protein contains Pfam profi...    27   8.2  
At1g27030.1 68414.m03295 expressed protein                             27   8.2  

>At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin;
           glycine-rich protein 17 (GRP17) PMID:11431566; function:
           pollen recognition (PMID:10655594)
          Length = 543

 Score = 33.9 bits (74), Expect = 0.095
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 461 ADGNSGAEEGGSKKKDENENQLKRTKSRELRGCSSGEDGATGSNGPLS 604
           ++G     EGG  K  + + + K  K + + G S  E+G +GS G +S
Sbjct: 231 SEGGMSGGEGGKSKSGKGKLKAKLEKKKGMSGGSESEEGMSGSEGGMS 278


>At1g69580.1 68414.m08003 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 332

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = +2

Query: 413 HNGSHLATLRF*KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRGCSSGEDGATGSN 592
           H  SHL   R  K    D N       S    EN+    +  SR+LRGCS  E+ +  + 
Sbjct: 74  HLKSHLQKYRLGKSMKFDDNKLEVSSAS----ENQEVESKNDSRDLRGCSVTEENSNPAK 129

Query: 593 GPLSSLPVLLMKL 631
             L     L M++
Sbjct: 130 EGLQITEALQMQM 142


>At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 351

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
 Frame = +2

Query: 212 LRSSVCLGQLSSEMAYKTASFFNKVRFATCAVPALVLNRVHRPVRRVCDAPRPARHTSHD 391
           L+ SVCL         K     +K   + C +P L L+    PV   C    PA     D
Sbjct: 221 LQCSVCLDDFEIGTEAKLMPCTHKFH-SDCLLPWLELHS-SCPV---CRYQLPADEAKTD 275

Query: 392 SVTLI*CHNGSHLATLRF*K-KKSADGNSGAEEGGSKKKDENE 517
           SVT    +NGS  A+       +++DGN   EE   ++++E E
Sbjct: 276 SVTTTSDNNGSSSASATTSHGAENSDGNRRQEEEEEEEEEEEE 318


>At1g09790.1 68414.m01098 phytochelatin synthetase-related contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 454

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 635 STASSTALASWIVVHCYLLHHL 570
           S++SS  ++S  VV C+LLHHL
Sbjct: 429 SSSSSAVISSVSVVFCFLLHHL 450


>At2g44430.1 68415.m05525 DNA-binding bromodomain-containing protein
           contains Pfam domains, Pfam PF00439: Bromodomain and
           PF00249: Myb-like DNA-binding domain
          Length = 646

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +2

Query: 449 KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRGCSSGEDGATGSNGPLSSLP 613
           +K++ D N   + GG+ KKD       +TK RELR  S G+  A   N P+   P
Sbjct: 563 QKEAKDQN---KSGGNVKKDS------KTKPRELRSSSVGKKKAEVENTPVKRAP 608


>At2g17705.1 68415.m02051 expressed protein
          Length = 135

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 151 TTIMCTPCGPMVCYKYEDCGPPL 219
           T I CT C  ++ Y Y+D GPPL
Sbjct: 72  TKIKCTSCNHLIGYIYDD-GPPL 93


>At1g65440.1 68414.m07424 glycine-rich protein 
          Length = 1647

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +2

Query: 449  KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRGCSSG 568
            KK SADG  G+E GG KK D          SR+  G   G
Sbjct: 1608 KKSSADGGWGSESGG-KKSDGEGGWGNEPSSRKSDGGGGG 1646


>At1g54460.1 68414.m06212 expressed protein
          Length = 338

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +2

Query: 452 KKSADGNSGAEEGGSKKKDENENQLKRT-KSRELRGC-SSGEDGATGSNG 595
           K     NS      S  KD+     K T KS E+    +SG DG TG NG
Sbjct: 283 KDEVKTNSVPRTPNSSSKDQMRKSKKGTPKSEEVHEMFNSGHDGETGENG 332


>At5g56040.1 68418.m06992 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 953

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +2

Query: 416 NGSHLATLRF*KKKSADGNSGAEEGGSKKK---DENENQLKRTKSRELRGCSSGEDGATG 586
           N ++L  LR    + A GN  AE G  K     D +EN+L      E+ GC+S E     
Sbjct: 455 NCTNLYRLRLNGNRLA-GNIPAEIGNLKNLNFIDISENRLIGNIPPEISGCTSLEFVDLH 513

Query: 587 SNGPLSSLPVLLMK 628
           SNG    LP  L K
Sbjct: 514 SNGLTGGLPGTLPK 527


>At4g04130.1 68417.m00583 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At2g11345,  At3g42690
          Length = 1200

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +2

Query: 449 KKKSADGNSGAEE---GGSKKKDENENQLKRTKSRE-LRGCSSGEDGATGSNGP 598
           K+K+ +  +GA E     SKKK E +  + R + RE +   SSG   +  ++GP
Sbjct: 556 KEKATETAAGAPETPKSKSKKKKETKQPVTRKRKREEVTSLSSGSSSSGLNHGP 609


>At1g68370.1 68414.m07809 gravity-responsive protein / altered
           response to gravity protein (ARG1) identical to Altered
           Response to Gravity [Arabidopsis thaliana] GI:4249662;
           contains Pfam profile PF00226 DnaJ domain
          Length = 410

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = +2

Query: 317 VLNRVHRPVRRVCDAPRPARHTSHDSVTLI*CHNGSHLATLRF*K----KKSADGNSGAE 484
           V NR +   ++  D     R T H + +++   +G++L+     K    +   DG+S  E
Sbjct: 325 VTNR-YTQEKQTVDELLKQRDTIHSTFSVVKTPSGNNLSNGSSSKAQGDESKGDGDSAGE 383

Query: 485 EGGSKKKDENENQ 523
           EGG++ +D+++ +
Sbjct: 384 EGGTENRDKSKRK 396


>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
           protein / CHD family protein similar to chromatin
           remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
           GI:6478518; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00628: PHD-finger, PF00385:
           'chromo' (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 467 GNSGAEEGGSKKKDENENQLKRTKSRELRGCSSGEDG-ATGSNGPLSS 607
           G   +E+G S   +E+++  K   S  + GCS+ E G A+  + P SS
Sbjct: 154 GEQSSEKGKSISAEESKSTGKEVYSSPMDGCSTAELGHASADDRPDSS 201


>At2g19490.1 68415.m02278 recA family protein contains Pfam profile:
           PF00154 recA bacterial DNA recombination protein
          Length = 430

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 449 KKKSADGNSGAEEGGSKKK 505
           KK  +DGN  +EEG SKK+
Sbjct: 41  KKSKSDGNGSSEEGMSKKE 59


>At1g27030.1 68414.m03295 expressed protein
          Length = 310

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 629 ASSTALASWIVVHCYLLHHLHQKNNLAIHGF*FSLTDFRF 510
           A  +  A+W ++H Y ++HL      A+H F    +D +F
Sbjct: 175 AKESEFAAWTLIHGYTMNHL----AFAVHRFKHRFSDIKF 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,803,098
Number of Sequences: 28952
Number of extensions: 278099
Number of successful extensions: 883
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)