BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmte11e07 (677 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U39851-7|AAM81115.1| 668|Caenorhabditis elegans Proteasome regu... 54 7e-08 U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome regu... 54 7e-08 Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical pr... 29 2.3 S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 27 9.3 M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 27 9.3 AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 27 9.3 >U39851-7|AAM81115.1| 668|Caenorhabditis elegans Proteasome regulatory particle,non-atpase-like protein 2, isoform a protein. Length = 668 Score = 54.4 bits (125), Expect = 7e-08 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 11/174 (6%) Frame = +3 Query: 150 TSAAGIISLLDEPMSEV--KEFALKRLDN--IVDEFWPXXXXXXXXXXXLHEDKIFSQHQ 317 ++AA I +L+ P S V K LK ++ ++ W L ++ F +H Sbjct: 16 SNAAAFIRVLESPKSAVTDKVLVLKAFNDWDVLVNTWFEVADALPAVEQLLDNNTFPEHS 75 Query: 318 LAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARN-------EYVDTTIAKAIDFYTQK 476 AAL+ SKVY+ L +E +L +AL GD V A EYV+ I AID Y Sbjct: 76 SAALLVSKVYFCLEQYERALEFAL-RGDFNVVPATRTGLGNDAEYVNKIIETAIDTY--- 131 Query: 477 RKALFVDSSAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESI 638 K L S I +L D+++R+ R L+ + + L ET + + + +I Sbjct: 132 -KTLSKQGSG--IPQKLRDLIDRIVARNLDKREIWFVISLGFETTNLAMIDRAI 182 >U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome regulatory particle,non-atpase-like protein 2, isoform b protein. Length = 965 Score = 54.4 bits (125), Expect = 7e-08 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 11/174 (6%) Frame = +3 Query: 150 TSAAGIISLLDEPMSEV--KEFALKRLDN--IVDEFWPXXXXXXXXXXXLHEDKIFSQHQ 317 ++AA I +L+ P S V K LK ++ ++ W L ++ F +H Sbjct: 16 SNAAAFIRVLESPKSAVTDKVLVLKAFNDWDVLVNTWFEVADALPAVEQLLDNNTFPEHS 75 Query: 318 LAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARN-------EYVDTTIAKAIDFYTQK 476 AAL+ SKVY+ L +E +L +AL GD V A EYV+ I AID Y Sbjct: 76 SAALLVSKVYFCLEQYERALEFAL-RGDFNVVPATRTGLGNDAEYVNKIIETAIDTY--- 131 Query: 477 RKALFVDSSAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESI 638 K L S I +L D+++R+ R L+ + + L ET + + + +I Sbjct: 132 -KTLSKQGSG--IPQKLRDLIDRIVARNLDKREIWFVISLGFETTNLAMIDRAI 182 >Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical protein C15C8.6 protein. Length = 316 Score = 29.5 bits (63), Expect = 2.3 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -3 Query: 165 SPRQT*CSFFFVILFNLF 112 +PR+T CS FF I+F+LF Sbjct: 224 APRETICSLFFYIIFDLF 241 >S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. Length = 1475 Score = 27.5 bits (58), Expect = 9.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 135 RKMNITSAAGIISLLDEPMSEVKEFALKR 221 R N+ + S LDEP E+ EF++KR Sbjct: 1110 RVYNLVQKQRLASSLDEPQVELDEFSIKR 1138 >M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein protein. Length = 1475 Score = 27.5 bits (58), Expect = 9.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 135 RKMNITSAAGIISLLDEPMSEVKEFALKR 221 R N+ + S LDEP E+ EF++KR Sbjct: 1110 RVYNLVQKQRLASSLDEPQVELDEFSIKR 1138 >AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx animals transformedinto males protein 2, isoform a protein. Length = 1475 Score = 27.5 bits (58), Expect = 9.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 135 RKMNITSAAGIISLLDEPMSEVKEFALKR 221 R N+ + S LDEP E+ EF++KR Sbjct: 1110 RVYNLVQKQRLASSLDEPQVELDEFSIKR 1138 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,542,302 Number of Sequences: 27780 Number of extensions: 294386 Number of successful extensions: 825 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 800 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 825 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1539654388 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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