Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e07
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32730.1 68415.m04005 26S proteasome regulatory subunit, puta...   173   1e-43
At1g04810.1 68414.m00477 26S proteasome regulatory subunit, puta...   169   2e-42
At3g12150.1 68416.m01514 expressed protein                             32   0.40 
At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami...    30   1.6  
At4g29800.1 68417.m04243 patatin-related low similarity to patat...    28   4.9  
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p...    27   8.6  

>At2g32730.1 68415.m04005 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
           norvegicus]
          Length = 1004

 Score =  173 bits (420), Expect = 1e-43
 Identities = 85/178 (47%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
 Frame = +3

Query: 147 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQ--L 320
           ++SA G++++L+EP   +K  AL  L+N+VD+FWP           L+ED+ F  HQ  L
Sbjct: 6   VSSAGGLLAMLNEPHPVLKLHALSNLNNLVDQFWPEISTSVPIIESLYEDEEFDLHQRQL 65

Query: 321 AALVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQKRKALFVDS 500
           AAL+ SKV+Y+LG   DSL+YALGAG LFDV+  ++YV T +AKAID Y   R      +
Sbjct: 66  AALLVSKVFYYLGELNDSLSYALGAGPLFDVSEDSDYVHTLLAKAIDEYASLRSKAVESN 125

Query: 501 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQY 674
               ID RLE IV RM  +C+ DG+Y+QA+G+A+E RR+D  EE+I+KSD++ G L Y
Sbjct: 126 EMVDIDPRLEAIVERMLGKCISDGKYQQAMGIAIECRRLDKLEEAIIKSDNVQGTLSY 183


>At1g04810.1 68414.m00477 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
           norvegicus]
          Length = 1001

 Score =  169 bits (410), Expect = 2e-42
 Identities = 83/178 (46%), Positives = 118/178 (66%), Gaps = 2/178 (1%)
 Frame = +3

Query: 147 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQ--L 320
           ++SA G++++L+EP   +K  AL  L  +VD+FWP           L+ED+ F QHQ  L
Sbjct: 6   VSSAGGLLAMLNEPHPSLKLHALSYLIRLVDQFWPEISTSVPIIESLYEDEEFDQHQRQL 65

Query: 321 AALVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQKRKALFVDS 500
           AAL+ASKV+Y+LG   DSL+YALGAG LFDV+  ++Y+ T ++KAID Y   R      S
Sbjct: 66  AALLASKVFYYLGELNDSLSYALGAGSLFDVSEDSDYIHTLLSKAIDEYAILRSKAVESS 125

Query: 501 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQY 674
               ID RL  IV RM  +C+ DG+Y+QA+G+A+E RR+D  EE+I+KS+++ G L Y
Sbjct: 126 EVVEIDPRLVAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAIIKSENVQGTLSY 183


>At3g12150.1 68416.m01514 expressed protein
          Length = 363

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
 Frame = -3

Query: 591 QALVCIVHLQGTSGTCDSRCLQDGDQLVQQN----------YPQREPFSFECKSRSL 451
           Q + C+VHL GT      R L+ G  LV+QN          Y QR PF  +C +R L
Sbjct: 120 QKMACVVHLAGTGDHTYDRRLRLGGPLVKQNIATMVLESPFYGQRRPF-LQCGARLL 175


>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
            protein / zinc finger (C5HC2 type) family protein
            contains Pfam domains, PF02375: jmjN domain, PF02373:
            jmjC domain and PF02928: C5HC2 zinc finger
          Length = 1183

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -3

Query: 360  LLNDSTLYWLLMRLADAGRKFCLRAGFLFSR*IQIFLAKTHRRCCPTSSERIL*LQTWAH 181
            +L+ + + + +  + DAGR   L   +L S   ++F+  +  RC     ER+    T  H
Sbjct: 990  ILDPTNMCFYISEILDAGRNSPLFMVYLESNPSEVFVHMSPTRCWEMVRERVNQEITKQH 1049

Query: 180  RAGK 169
            +AGK
Sbjct: 1050 KAGK 1053


>At4g29800.1 68417.m04243 patatin-related low similarity to patatin
           precursor [Solanum brevidens][GI:563125]; contains
           Patatin domain PF01743
          Length = 525

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 366 EDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQKRKALFVDSSAELID 518
           ED L  +LG G LF+VN   E V     K    + +    +  D SAE +D
Sbjct: 355 EDLLVLSLGTGQLFEVNYDYEQVKNWRVKE---WARPMARISGDGSAEFVD 402


>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF01480: PWI domain, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 899

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 368 RFFDIRARGWRSFRREREKRICRHYDRKSDRLLHSKEK 481
           R +  R R W   RREREK   R Y+++ ++    K K
Sbjct: 475 RAYQTRLRQWE--RREREKEKERQYEKEKEKEKERKRK 510


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,581,189
Number of Sequences: 28952
Number of extensions: 268039
Number of successful extensions: 725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)