Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e04
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7P055 Cluster: Probable methyl-accepting chemotaxis tr...    33   4.9  
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni...    33   4.9  

>UniRef50_Q7P055 Cluster: Probable methyl-accepting chemotaxis
           transducer; n=1; Chromobacterium violaceum|Rep: Probable
           methyl-accepting chemotaxis transducer - Chromobacterium
           violaceum
          Length = 690

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 433 VSRVLWCVEASDTLVILISCLLIWNASN-VRSPL 531
           V+R +W V A D +V+L+S L+IW  S  +  PL
Sbjct: 332 VTRTIWWVAAVDAVVLLLSLLVIWRVSGFISRPL 365


>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
           (EC 1.9.3.1) (Alternative cytochrome c oxidase
           polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
           subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
           oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
           oxidase polypeptide I) (Cytochrome BB3 subunit 1)
           (Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
          Length = 591

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 483 NKLSSYMECIECAVTF-ERVFLFNLVGSLFAGPASSASPDRWST 611
           + L++++  +   V F + VFLFNLV SLF G  S  +P R +T
Sbjct: 493 HSLNAFITVVALTVGFAQMVFLFNLVWSLFEGEPSGGNPWRATT 536


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,387,380
Number of Sequences: 1657284
Number of extensions: 12273029
Number of successful extensions: 31886
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31867
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)