Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e04
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    27   2.5  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   4.4  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    25   7.8  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    25   7.8  

>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 463 KLPHTIAHAKHQCRRYIVYLLYSSACSVSHW 371
           K+P   A+A  Q  R IV+LL SS    S W
Sbjct: 89  KIPSRTANAIQQSNRVIVHLLSSSIKKHSEW 119


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 587 RRSRPRKEAPNQVKKKYSLKGDRTFDAFHIRRQLINMTRVSEASTHHST 441
           R+ +P + AP       +L  D TF  F + +    ++RVS  S  HS+
Sbjct: 39  RKLKPSRTAPKPPAINTNLAED-TFSGFPLSQSRTTVSRVSLGSRQHSS 86


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 554 GWEPLCGACFFGKPRPLEHWFIRW 625
           G +P+CG  F G+P   +  F R+
Sbjct: 420 GVKPVCGQLFMGEPNSADKIFFRF 443


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 310 VLGIVSNVKFEVVTFDREPLANDLHYMLMSKEDKLY 417
           V+G+ S+ +   V F + P   D+ Y +  +++KL+
Sbjct: 214 VIGLKSHGEHVEVNFGQNPFLYDIDYAIQMEKNKLF 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,802
Number of Sequences: 5004
Number of extensions: 51839
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)