Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e04
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0492 - 24874517-24874960,24875672-24875815,24876214-248762...    28   6.0  
11_01_0381 + 2890778-2891506                                           28   8.0  

>03_05_0492 -
           24874517-24874960,24875672-24875815,24876214-24876282,
           24876452-24876570,24878292-24878580
          Length = 354

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 579 ASSASPDRWSTGLYDGCC 632
           A+ A+P RW+T   DGCC
Sbjct: 332 AAVAAPFRWATAAGDGCC 349


>11_01_0381 + 2890778-2891506
          Length = 242

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 307 STLMPRNLATNWTSKTWRSVS-RLERKSGVLCTE 209
           S L+P+ +A N  SK W  VS R +R++ V+C E
Sbjct: 173 SLLLPKQIAKNSASK-WSLVSKRFQRRNVVVCEE 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,304,030
Number of Sequences: 37544
Number of extensions: 341604
Number of successful extensions: 937
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)