Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e04
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.51 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.3  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 481 LISCLLIWNASNVRSPLSEYFF 546
           +I+C++IW   ++++P + Y F
Sbjct: 52  IITCIVIWRNPSMQTPTNYYLF 73


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 636 WKYQRLIPDGIFIFIF 683
           WKY  ++ D IF++IF
Sbjct: 539 WKYVAMVLDRIFLWIF 554


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 591 SPDRWSTGLYDGCCRWKYQRLIPDGIFIFIF 683
           SP R +T  YD CC+ +   +  D +  F F
Sbjct: 337 SPVRPATVQYDTCCQGRATAIYIDKVSRFFF 367


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 118 GDAPELPKHMTFSKSDVPLIGALLDFLETSFQYIR 222
           G   +LP H T  +S   ++    DFLE  F  IR
Sbjct: 47  GSVMQLPIHGTEPRSKEEILLHAKDFLEQYFSSIR 81


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 579 QAPQRGSQPS 550
           QAPQRGS P+
Sbjct: 32  QAPQRGSPPN 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,109
Number of Sequences: 438
Number of extensions: 3623
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)