Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e04
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74190.1 68414.m08592 leucine-rich repeat family protein cont...    30   1.3  
At5g44850.1 68418.m05497 hypothetical protein strong similarity ...    27   8.8  
At3g60720.1 68416.m06793 receptor-like protein kinase-related co...    27   8.8  

>At1g74190.1 68414.m08592 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 965

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 480 INKLSSYMECIECAVTFERVFLFNLVGSLFAGPASSASPDRWSTGLYDGCCRWK 641
           + +L  Y  CI+     E++ LF L   + +   S +    W+      CCRWK
Sbjct: 18  MGQLHGYKSCID----EEKIALFELRKHMISRTESESVLPTWTNDTTSDCCRWK 67


>At5g44850.1 68418.m05497 hypothetical protein strong similarity to
           unknown protein (gb AAC79136.1)
          Length = 331

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 427 IDVSRVLWCVEASDTLVILISCLLIWNASNVRSPLSEYFFLTWLGASLRGLLLRQAPTAG 606
           +DV    W  +A D  V  +   L+W+A  +  P S Y   T +   +   +L   P++ 
Sbjct: 46  VDVEVGKWVAKAVDRFVRKLKFKLLWSADPISLPKSLYTCETLVKLKISDKVLTDFPSSP 105

Query: 607 A 609
           A
Sbjct: 106 A 106


>At3g60720.1 68416.m06793 receptor-like protein kinase-related
           contains Pfam PF01657: Domain of unknown function,
           duplicated in 33kDa secretory proteins; weak similarity
           to receptor-like protein kinase homolog RK20-1
           (GI:4530126) [Phaseolus vulgaris]
          Length = 279

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 534 RVFLFNLVGSLFAGPASSASPDRWSTGLYDGCCRWKY 644
           R+FLF+L+   F   +SS S       +Y GC   KY
Sbjct: 3   RLFLFSLLFLFFYSSSSSRSSSESHIFIYGGCSPEKY 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,879,916
Number of Sequences: 28952
Number of extensions: 273042
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)