Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e03
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    29   0.032
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    29   0.032
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    24   1.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.4  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 29.5 bits (63), Expect = 0.032
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 106 IQPWIQWRRYVLEKNMALCGWKY 174
           I P   W RYV E NM  CG  Y
Sbjct: 184 IAPMFGWNRYVPEGNMTACGTDY 206


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 29.5 bits (63), Expect = 0.032
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 106 IQPWIQWRRYVLEKNMALCGWKY 174
           I P   W RYV E NM  CG  Y
Sbjct: 60  IAPMFGWNRYVPEGNMTACGTDY 82


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 582 DIMLKRMDLDHDGVINFTDFRQC 650
           D+ L  + LD DG I   DF  C
Sbjct: 110 DLKLDNVLLDQDGHIKIADFGMC 132


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = +3

Query: 276 SRSHFRDVLHTGLGMTDSYMMERVMVALD-RGTSPYVTMATFAKAISLYLRGDIEERIAY 452
           +R + ++ + T L  TD + +E+++   + +G   Y+      K  +  L+ +  E I+ 
Sbjct: 226 TRHNTKNGMKTLLSETDIWEVEQILAKKEIKGVPTYLI-----KWKNWDLKYNTWEPISN 280

Query: 453 AFTCYDLLGEGHLRRETMYQLMKKSLAKASRDDDVEEAVKEL 578
              C D+L E    R  + +  K+ +     + D+E+ +  L
Sbjct: 281 LINCSDILEEFERNRLQLLESFKRKVNFYPNNQDIEKFLNYL 322


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 256 GFSSRFCILKNITIIFSNSSKVKCVSFCIS 167
           G   R   LKN+ +   N +K+    FCI+
Sbjct: 717 GLVHRDVKLKNVLLDIENRAKLTDFGFCIT 746


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 256 GFSSRFCILKNITIIFSNSSKVKCVSFCIS 167
           G   R   LKN+ +   N +K+    FCI+
Sbjct: 755 GLVHRDVKLKNVLLDIENRAKLTDFGFCIT 784


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,977
Number of Sequences: 438
Number of extensions: 4017
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)