Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e01
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    29   0.34 
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    24   9.7  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    24   9.7  

>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 294 RLQKRLLQIKMKYQINAYPTYKHLKRKLKIQTRLSLQMRIY 416
           R+ +R +     Y +  YP++  LK   KI+TRLSL  +++
Sbjct: 165 RISERSIIRDSIYMLIGYPSFFFLKNGSKIETRLSLLPKLH 205


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 300 QKRLLQIKMKYQINAYPTYKHLKRKL 377
           +KRL+Q+  KY ++  P  + L  K+
Sbjct: 342 KKRLIQVVSKYNVHGDPLIQELSDKI 367


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 255 CRVFISRFSASKVSALCLLVILKSLEFVNVSL-PISNCTFNYFK 127
           C V  +R+S + V  LCL  +L  + + +  L P  N   N FK
Sbjct: 492 CLVDSARYSTANVPPLCLDALLNFIYYFHEHLQPCYNDPNNTFK 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,733
Number of Sequences: 5004
Number of extensions: 25569
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)