Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e01
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883     28   4.2  
03_05_0382 + 23649597-23649645,23649675-23649735,23650784-236509...    27   9.6  
02_05_1140 + 34386042-34386302,34386738-34386917,34386999-343870...    27   9.6  

>01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883
          Length = 424

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 293 APPETPSANQDEISDKCLSYI 355
           A P+TPS N  +I  +CL Y+
Sbjct: 60  ATPQTPSMNSIDIKKRCLKYL 80


>03_05_0382 +
           23649597-23649645,23649675-23649735,23650784-23650937,
           23651019-23651149,23651239-23651315,23651439-23651477,
           23651976-23652067,23652140-23652277,23652385-23652549
          Length = 301

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 94  RIKKFCEFTLNSTVCIRI 41
           RI+K CEFT +S +C+ I
Sbjct: 63  RIQKACEFTTSSVLCVCI 80


>02_05_1140 +
           34386042-34386302,34386738-34386917,34386999-34387080,
           34387180-34387287,34387442-34387630,34387814-34388010
          Length = 338

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 342 HLSDISS*FAEGVSGGAFSIILQTLRQLXCRVFISRFSASKVSA 211
           HLS   S    G S G  +  +Q  + L  +VF++  S  K++A
Sbjct: 139 HLSPSESFLIHGGSSGIGTFAIQIAKHLGIKVFVTAGSEEKLAA 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,654,617
Number of Sequences: 37544
Number of extensions: 128593
Number of successful extensions: 208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)