Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e01
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.52 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.6  
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        21   4.8  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   8.5  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   8.5  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   8.5  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   8.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 100 YCRIKKFCEFTLNSTVCI 47
           YC I K CE + NST+ +
Sbjct: 86  YCGIGKECELSPNSTIAV 103


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 2   KMWFQNQTSETKEDTNTNG 58
           K+WFQN+  + K++  + G
Sbjct: 315 KIWFQNRRMKWKKENKSKG 333


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 2  KMWFQNQTSETKE 40
          K+WFQN+ S+ K+
Sbjct: 26 KIWFQNRRSKYKK 38


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 2  KMWFQNQTSETKED 43
          K+WFQN+  + K++
Sbjct: 53 KIWFQNRRMKLKKE 66


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 2  KMWFQNQTSETK 37
          K+WFQN+ ++ K
Sbjct: 54 KIWFQNRRAKAK 65


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 2   KMWFQNQTSETKE 40
           K+WFQN+ ++ K+
Sbjct: 65  KIWFQNKRAKIKK 77


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 2   KMWFQNQTSETKE 40
           K+WFQN+ ++ K+
Sbjct: 65  KIWFQNKRAKIKK 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,898
Number of Sequences: 438
Number of extensions: 1858
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)