Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d22
         (394 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    25   0.27 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   1.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   1.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   4.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   4.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   5.8  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   7.6  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   7.6  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.27
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 135 TRCHSPRFQHYLPTSH 182
           T  HSPRF  Y PT++
Sbjct: 69  THWHSPRFHAYFPTAN 84


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 108 WKSCRHLHTTRCHSPRFQHYLPT 176
           W +  H H T  H+   Q+Y PT
Sbjct: 286 WTANGHGHNTSSHNYYAQNYAPT 308


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 34  KEPSSSPLLWPLGRILQLYSGSDDIGR 114
           K+  S P+LWP       YS     GR
Sbjct: 181 KKTESQPMLWPAWVYCTRYSDRPSSGR 207


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 313 NKQMCRP*RLEM 278
           NK +CRP R+E+
Sbjct: 26  NKYLCRPRRIEI 37


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 313 NKQMCRP*RLEM 278
           NK +CRP R+E+
Sbjct: 157 NKYLCRPRRIEI 168


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +1

Query: 34  KEPS---SSPLLWPLGRILQLYSGSDDIGRVADIYTRRGVIRRAFNTICPLPINY*RHFN 204
           +EPS   SS   + + R+L       DI   AD++      +  +NT+ PLP +   H  
Sbjct: 358 QEPSGFTSSNHPFSINRLLPTAESKADIKMYADMH------QYGYNTLSPLPSSVHSHST 411

Query: 205 RG 210
            G
Sbjct: 412 IG 413


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 35  RNHHHLRYCGHLDAY 79
           +NH H++   H+D Y
Sbjct: 88  KNHPHIQLPKHVDQY 102


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +2

Query: 263 RLTPFHFQPSWATHLFISY 319
           + TP H  P   TH+  ++
Sbjct: 105 KFTPEHIIPDLCTHIIFAF 123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,388
Number of Sequences: 336
Number of extensions: 1724
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8330471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)