Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d22
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    27   0.79 
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   1.0  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    27   1.4  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    26   2.4  
SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch...    25   3.2  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           25   3.2  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   4.2  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   5.5  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    24   7.3  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    24   9.7  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    24   9.7  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    24   9.7  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    24   9.7  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    24   9.7  

>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 7/26 (26%), Positives = 19/26 (73%)
 Frame = +1

Query: 112 RVADIYTRRGVIRRAFNTICPLPINY 189
           +++D+ TRR +I+  ++++  +P+ Y
Sbjct: 378 KISDLETRRNIIQEVYDSLINIPVTY 403


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 180 HQLLKTLQPGSMFEFGMSKVSTSDVRYDALPLSISSRHGRHICLFLIVINFKFFILS 350
           H++L+ L+   +   G++     D+ YD++  SIS+R  R   L L  + F+  +L+
Sbjct: 651 HEILEVLRRWQLLGIGIA-----DIIYDSVSASISARIKRQNSLNLKPVRFRISVLA 702


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 210 SPVEVSSIIDGKWADSVESAANDTSSCVDVCNSSNIVTTTVQLKYAS 70
           +PV  S+++D   + +  S+   TSS V V +SS + ++T     AS
Sbjct: 106 TPVSSSAVVDSATSAAASSSVIPTSSSV-VASSSEVASSTTSSAAAS 151


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 35 RNHHHLRYCGHLDAYFSC 88
          R  HH R+CG L  Y  C
Sbjct: 44 RRRHHCRWCGKLFCYNCC 61


>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 31  VKEPSSSPLLWPLGRILQLYSGSDDIGRVADIYTRRGVIRRAFN 162
           ++EP S+ L++  G+++ L   S+D  ++A     R + +  FN
Sbjct: 97  IREPKSTALIFASGKMVVLGGKSEDDSKLASRKYARIIQKLGFN 140


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 8/42 (19%), Positives = 21/42 (50%)
 Frame = -2

Query: 312 INRCVAHDGWKWKGVRRHSGRRSLTPLTFRIQTYSPVEVSSI 187
           +++C+    WKW G +  +  +S      R++   P++ + +
Sbjct: 325 MSKCIYLKDWKWCGTKLQNLEKSALSCFVRVRHQQPLQPAKV 366


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 157 FNTICPLPI--NY*RHFNRGVCLNSECQRCQRATSAMTPYPFPFPAVMGDTSVYF 315
           F  I P PI  +Y + + R VC +         T  +T  P P  +V  D ++YF
Sbjct: 307 FAEIFPQPIFQDYLQQYKRAVCFSKF--GIVMDTKGLTLPPVPTESVPNDINIYF 359


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 50  LRYCGHLDAYFSCTVVVTILEELQTS 127
           ++YC  L+    CT++  I + LQ S
Sbjct: 302 IKYCTKLEVTAGCTLISYIADRLQNS 327


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 243 LTPLTFRIQTYSPVEVSSIIDGKWADSVESAANDTSSCVDVCNSSNIV-TTTVQLKYASK 67
           LT LT R + Y     S ++  KW    + + +  S  +++C   ++  +  V L  +S 
Sbjct: 101 LTVLTNRHRVYFFSSSSRVLHQKWTCVAQMSTHLPSDPLELCRIHSVAWSPLVSLPSSSP 160

Query: 66  W 64
           W
Sbjct: 161 W 161


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 62  GHLDAYFSCTVVVTILEELQTSTHDEV 142
           G++DA     +  ++ EEL +STH  +
Sbjct: 300 GNIDAACESVITSSLPEELDSSTHSPI 326


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 86  CTVVVTILEELQTSTHDEVSFAALSTLSAHFPSIIEDT 199
           CT V+  LEE+ T T  + +   L  L  H    +++T
Sbjct: 54  CTKVLNELEEITTHTTYDSNARVLRQLCEHASEPVDET 91


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 189 LKTLQPGSMFEFGMSKVSTSDVR-YDAL 269
           LKTL+   +F +GM+    +D R YD++
Sbjct: 654 LKTLETQDVFSYGMAVAPVTDWRLYDSV 681


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 303 CVAHDGWKWKGVRRHSGRRSLTPLTFRIQTY 211
           C+  D    +G +  S  R+L+PLT  +Q Y
Sbjct: 51  CIWPDRPNMRGKKPSSAARTLSPLTGIVQPY 81


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 275 FHFQPSWATHLFISYSH*F*ILY 343
           +   P+W T  + S++H F ILY
Sbjct: 687 YRLLPTWYTAFYNSHTHGFPILY 709


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,884
Number of Sequences: 5004
Number of extensions: 30724
Number of successful extensions: 93
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)