Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d22
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    39   0.001
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z93396-8|CAB07710.2|  333|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AL033509-2|CAA22060.2|  333|Caenorhabditis elegans Hypothetical ...    28   2.7  
Z73975-2|CAA98275.1|  104|Caenorhabditis elegans Hypothetical pr...    26   8.4  

>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
            protein ZC132.5 protein.
          Length = 1277

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 13   VGDLVIVKEPSSSPLLWPLGRILQLYSGSDDIGRVADIYTRRG-VIRRAFNTICPLPINY 189
            VG +V++ +P+     W +G+I +    +D I R A + T  G  IRR  N I PL I  
Sbjct: 1083 VGQVVLICDPNLPRNNWKMGKITETKPSTDGILREAHLLTATGRTIRRPINLITPLEIEE 1142

Query: 190  *RH 198
             +H
Sbjct: 1143 IQH 1145


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 52  PLLWPLGRILQLYSGSD 102
           P+ WPLG+IL  Y+G D
Sbjct: 281 PITWPLGKILDKYAGVD 297


>Z93396-8|CAB07710.2|  333|Caenorhabditis elegans Hypothetical
           protein ZC15.2 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 71  DAYFSCTVVVTILEELQT-STHDEVSFAALSTLSAHFP 181
           DA  +CT + T+L  L+T    D V+  AL+ L A +P
Sbjct: 177 DAIHNCTNIGTVLSGLETLDERDFVAAGALTLLGAGYP 214


>AL033509-2|CAA22060.2|  333|Caenorhabditis elegans Hypothetical
           protein ZC15.2 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 71  DAYFSCTVVVTILEELQT-STHDEVSFAALSTLSAHFP 181
           DA  +CT + T+L  L+T    D V+  AL+ L A +P
Sbjct: 177 DAIHNCTNIGTVLSGLETLDERDFVAAGALTLLGAGYP 214


>Z73975-2|CAA98275.1|  104|Caenorhabditis elegans Hypothetical
           protein T06E8.2 protein.
          Length = 104

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 80  FSCTVVVTILEELQTSTHDEVSFAALSTLSAHFPSII 190
           FS    + +L+E   +T  E +F  +S  S H PSI+
Sbjct: 53  FSSCPFLCLLQEDNPTTISERNFREISLFSVHSPSIL 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,611,683
Number of Sequences: 27780
Number of extensions: 174745
Number of successful extensions: 530
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)