Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d22
         (394 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64570.1 68418.m08115 glycosyl hydrolase family 3 protein           29   0.85 
At1g74630.1 68414.m08643 pentatricopeptide (PPR) repeat-containi...    29   0.85 
At3g15430.2 68416.m01958 regulator of chromosome condensation (R...    28   2.0  
At3g15430.1 68416.m01957 regulator of chromosome condensation (R...    28   2.0  
At1g11300.1 68414.m01298 S-locus lectin protein kinase family pr...    27   4.5  
At4g16570.1 68417.m02508 protein arginine N-methyltransferase-re...    27   6.0  

>At5g64570.1 68418.m08115 glycosyl hydrolase family 3 protein 
          Length = 784

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -2

Query: 297 AHDGWKWKGVRRHSGRRSLTPLTFRIQTYSPVEVSSIIDGKWADSVES--AANDTSSCVD 124
           A+D   WKGV R+S    +T       TY P   S ++DG  A  + S    N   +C D
Sbjct: 229 AYDVDNWKGVERYSFNAVVTQQDMD-DTYQPPFKSCVVDGNVASVMCSYNQVNGKPTCAD 287


>At1g74630.1 68414.m08643 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 643

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 73  RILQLYSGSDDIGRVADIYTRRGVIRRAFNTICPLPI 183
           R+  +    +  G + D+Y R G +++A++ IC +PI
Sbjct: 399 RVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPI 435


>At3g15430.2 68416.m01958 regulator of chromosome condensation
           (RCC1) family protein low similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 488

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +1

Query: 70  GRILQLYSGSDDIGRVAD-IYTRRGVIRRAFNTICPLPINY*RHFNRGVCLNSECQRCQR 246
           G   +L+S    + + +D + T +G ++ A      L IN  + ++ GV L+        
Sbjct: 88  GNWKRLFSFLQSVEQSSDMVETSQGKMQIATGKYHTLLINNSKVYSCGVSLSGVLAHGSE 147

Query: 247 ATS--AMTPYPFPFPAVMGDTS 306
            T   A TP  FPFPA +   S
Sbjct: 148 TTQCVAFTPIEFPFPAQVAQVS 169


>At3g15430.1 68416.m01957 regulator of chromosome condensation
           (RCC1) family protein low similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 488

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +1

Query: 70  GRILQLYSGSDDIGRVAD-IYTRRGVIRRAFNTICPLPINY*RHFNRGVCLNSECQRCQR 246
           G   +L+S    + + +D + T +G ++ A      L IN  + ++ GV L+        
Sbjct: 88  GNWKRLFSFLQSVEQSSDMVETSQGKMQIATGKYHTLLINNSKVYSCGVSLSGVLAHGSE 147

Query: 247 ATS--AMTPYPFPFPAVMGDTS 306
            T   A TP  FPFPA +   S
Sbjct: 148 TTQCVAFTPIEFPFPAQVAQVS 169


>At1g11300.1 68414.m01298 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 1635

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
 Frame = -2

Query: 231 TFRIQTYSPVEVSSIIDGKWADSV-----------ESAANDTSSCVDVCNSSNIVTTTVQ 85
           TFR   +SPV  +S   G W +SV           +   ND+S  + V    N+V T  Q
Sbjct: 48  TFRFGFFSPVNSTSRYAGIWYNSVSVQTVIWVANKDKPINDSSGVISVSQDGNLVVTDGQ 107


>At4g16570.1 68417.m02508 protein arginine
           N-methyltransferase-related contains weak similarity to
           protein arginine N-methyltransferase 2 (EC 2.1.1.-)
           (Swiss-Prot:P55345) [Homo sapiens]
          Length = 724

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 65  HLDAYFSCTVVVTILEELQTSTHDEVSFAALSTLSAH 175
           HL A  +CT ++  L++ Q+ TH+   F  LST   H
Sbjct: 373 HLHASHTCTNILYNLKKTQSLTHERTHF-PLSTGDLH 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,031,030
Number of Sequences: 28952
Number of extensions: 160616
Number of successful extensions: 464
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)