Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11d21
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 47 2e-06
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c... 33 0.036
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 29 0.44
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 28 1.0
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.4
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 26 5.5
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 25 7.2
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 7.2
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 9.5
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 9.5
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 25 9.5
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 47.2 bits (107), Expect = 2e-06
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Frame = +3
Query: 363 EEIKPKIKHDWYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELE- 539
E++ +I++DW QT + + I K + V + + +L L + S +SL L+
Sbjct: 178 EKLSNRIRYDWSQTSFSLNIDIYAKKVKDEDVSLLMEKNTLKIEIKLEDG-SIFSLVLDP 236
Query: 540 LAHEIIPTMCSYVVSPSKIEIKLRKK-EGLRWNQL 641
L EI+P S+ + SK+EI L KK ++W L
Sbjct: 237 LYEEIVPEKSSFKLFSSKVEITLIKKVSEIKWEAL 271
>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 315
Score = 33.1 bits (72), Expect = 0.036
Identities = 14/73 (19%), Positives = 38/73 (52%)
Frame = +3
Query: 432 IKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELAHEIIPTMCSYVVSPSKIEIKLR 611
++N + V +++ R + P P + ++Y + L+H +I + S + +++ ++L+
Sbjct: 120 LRNDKASTVNIEFPYREGIVTHPSPQAKNKYIINAGLSHNVIVSSPSVLAPRTRVTVRLK 179
Query: 612 KKEGLRWNQLEGE 650
+ QL+G+
Sbjct: 180 AQSPNEEGQLQGD 192
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 29.5 bits (63), Expect = 0.44
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 375 PKIKHDWYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELE 539
PK+++ E Q ++T + NA +DQ + Q S+ S S L +S+S Y L+ E
Sbjct: 77 PKLENVVKSPEGQKLITESLINATTDQNESQASQAKQS-SAQLSDSESGYPLDHE 130
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 390 DWYQTESQVVVTILIKNALS-DQVKVQYSERSL--SFS 494
DWY TE+ V++ LI ALS + VK Y ++ SFS
Sbjct: 1148 DWYSTENLTVLSTLIAAALSPNVVKCVYPDKKFVASFS 1185
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 489 FSCPLPNSDSEYSLELELAHEIIPTMCSYVVSPSKIEI 602
+ CP+PN D Y + L + + CS + +P+ I
Sbjct: 350 YKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPI 387
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 442 AFLINIVTTTCDSVWYQSCLIFGLISSETQEFFCSSDIIYG 320
+FL++ T + SC+ FG+I + F C + I+ G
Sbjct: 35 SFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGG 75
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 440 ILD*YSDNHL*LRLVPIMF 384
ILD Y +NHL LR VPI +
Sbjct: 277 ILDEYWNNHLDLRSVPIYY 295
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -1
Query: 362 RNTGILLFFRHYLWLFLQLRSTLALKLSTYV*FHFVFFKLSRKFNSAIF 216
+N I+ R+ WLFLQ + LKL V F+ + S F IF
Sbjct: 982 KNLSIIDIIRNNWWLFLQGLAIDLLKLPWAVFHIFLRYLFSHSFLVIIF 1030
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +3
Query: 417 VVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELAHEIIPTMCSYVVS 584
V+ I +K + ++V+Y LS + + E +LE +++ + +YV+S
Sbjct: 478 VLRIAVKTFADETLEVKYQILELSVRLYVLSHSEEKQNDLESRDDVVSLLFNYVLS 533
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -2
Query: 475 SLYWTLTWSLRAFLINIVTTTCDSVWYQSCLIFGLISSETQEFFCSSDIIY 323
SL W +L A+ + + T C+ + + FG E ++ FCS Y
Sbjct: 281 SLAWNGPSALDAYTVFAIETLCEFLSESAVSPFGQTFVEIEDPFCSFVYFY 331
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 25.0 bits (52), Expect = 9.5
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 390 DWYQTESQVVVTIL-IKNALSDQVKVQYSERSLS---FSCPLPNSDSEYSLELELAHEII 557
++++ + ++ TI +N+L+ Q K+Q SERS+ + P+ S S+ + +I
Sbjct: 207 NFFKESTGILNTIFNSQNSLTPQKKIQSSERSVENEFLASPMDPSLSKLFTKTTNTEKIS 266
Query: 558 PTMCSYVVSPSKIE 599
PT S SK E
Sbjct: 267 PTPFSTPKRKSKKE 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,847
Number of Sequences: 5004
Number of extensions: 46899
Number of successful extensions: 126
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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