Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11d21
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0754 + 24933860-24934031,24936035-24936104,24936192-249363... 71 8e-13
01_05_0096 + 18073573-18073839,18073890-18074294 59 3e-09
01_06_0764 - 31804811-31804915,31805013-31805072,31805720-318059... 32 0.35
02_03_0112 - 15363764-15364060,15364227-15364339,15364376-153644... 30 1.4
03_02_0940 + 12583131-12583280,12583805-12583996,12584185-125843... 28 7.5
10_06_0099 - 10677024-10677073,10677894-10677998,10678254-106783... 27 9.9
05_05_0339 + 24213179-24213821,24214402-24214623,24215035-242152... 27 9.9
01_01_0355 + 2810340-2813112,2813213-2813637 27 9.9
>01_05_0754 +
24933860-24934031,24936035-24936104,24936192-24936316,
24936539-24936677,24936926-24937022,24937105-24937170,
24937478-24937616,24938149-24938258,24938355-24938459,
24938579-24938686
Length = 376
Score = 70.9 bits (166), Expect = 8e-13
Identities = 34/93 (36%), Positives = 54/93 (58%)
Frame = +3
Query: 366 EIKPKIKHDWYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELA 545
E+KPK +HD+Y + ++VV+TI K ++ V V + E+ LS S +P + Y + L
Sbjct: 163 EVKPKYRHDFYNSATEVVLTIFAKGVPAENVVVDFGEQMLSVSIEVP-GEEPYHFQPRLF 221
Query: 546 HEIIPTMCSYVVSPSKIEIKLRKKEGLRWNQLE 644
+IIP Y V +K+EI+L K E + W L+
Sbjct: 222 SKIIPEKSRYQVLSTKVEIRLAKAEQITWTSLD 254
>01_05_0096 + 18073573-18073839,18073890-18074294
Length = 223
Score = 58.8 bits (136), Expect = 3e-09
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 372 KPKIKHDWYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELAHE 551
KPK KHD+Y S+VVVT+ K+ ++ V V + E+ LS S E
Sbjct: 47 KPKYKHDFYNGASEVVVTVFAKSVAAEHVSVDFGEQMLSVSV-----------------E 89
Query: 552 IIPTMCSYVVSPSKIEIKLRK-KEGLRWNQLE 644
++P C Y + PSKIE++L K E + W LE
Sbjct: 90 VVPAKCRYSILPSKIEVRLAKADEQVTWTSLE 121
>01_06_0764 -
31804811-31804915,31805013-31805072,31805720-31805959,
31807367-31807525,31807653-31807769
Length = 226
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/83 (21%), Positives = 34/83 (40%)
Frame = +3
Query: 393 WYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELAHEIIPTMCS 572
W Q ++ + + ++ D+V+ + S+ + +L EI+P C
Sbjct: 84 WDQDAEKIKIYVFLEGVEQDKVETTFKPMSVDTKFHDVKGKNYRCAIPKLHKEIVPEKCK 143
Query: 573 YVVSPSKIEIKLRKKEGLRWNQL 641
+V P+KI + L K W L
Sbjct: 144 VLVKPTKIIVTLYKASKGNWLDL 166
>02_03_0112 -
15363764-15364060,15364227-15364339,15364376-15364478,
15365174-15365218
Length = 185
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 363 EEIKPKIKHDWYQTESQVVVTILIKNALSDQVKVQYSER-SLSFSCPLPNSDSEYSLELE 539
++I K DW + ++V ++ I LSD +K ER +L + + + E+++++E
Sbjct: 52 DDIVSKDCFDWVCSVPKIVQSLCIILRLSDDLKSYERERLTLHVASTIDSCMKEHNIDIE 111
Query: 540 LAHEII 557
+A+E I
Sbjct: 112 MAYEKI 117
>03_02_0940 +
12583131-12583280,12583805-12583996,12584185-12584350,
12584774-12584801,12585525-12585594,12586399-12586435,
12587760-12588148
Length = 343
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 568 HIVGIISCANSSSKLYSESEL 506
H VG+ C N S+LY ES +
Sbjct: 217 HTVGVAQCTNFRSRLYGESNI 237
>10_06_0099 -
10677024-10677073,10677894-10677998,10678254-10678315,
10678694-10679197,10679695-10680356,10680695-10680793,
10680881-10681110,10681227-10681278,10681391-10681577,
10681661-10681873,10682006-10682175,10683455-10683730,
10684188-10684643,10685527-10685766,10687517-10687771
Length = 1186
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 454 WSLRAFLINIVTTTCDSVWYQSCL 383
WS RA L+ ++ C SVW S +
Sbjct: 239 WSKRALLLGVLVGLCSSVWIFSSM 262
>05_05_0339 +
24213179-24213821,24214402-24214623,24215035-24215282,
24215385-24215524,24215579-24215753
Length = 475
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 433 INIVTTTCDSVWYQSCLIFGLISSETQEFF 344
+ +VT ++VW +I GL S+ET+E F
Sbjct: 142 LKVVTNLQEAVWDADIVINGLPSTETREVF 171
>01_01_0355 + 2810340-2813112,2813213-2813637
Length = 1065
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 241 RENSTQRFF*TSNVF*SIVTKCILDGLICWLTTNKQAQEFQTI 113
R ST+ F + S+ +C+L + C + N Q Q+F+ +
Sbjct: 773 RSGSTRSFLAECDALRSVRHRCLLKIITCCSSINNQGQDFKAL 815
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,066,407
Number of Sequences: 37544
Number of extensions: 245223
Number of successful extensions: 553
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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