Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11d21
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD contain... 50 1e-06
AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein... 50 1e-06
Z74030-14|CAA98442.1| 198|Caenorhabditis elegans Hypothetical p... 34 0.077
L16621-13|ABD63202.1| 141|Caenorhabditis elegans Hypothetical p... 31 0.94
AF003140-1|ABR92609.1| 538|Caenorhabditis elegans Hypothetical ... 29 3.8
Z46676-1|CAA86661.1| 799|Caenorhabditis elegans Hypothetical pr... 28 6.7
X16473-1|CAA34493.1| 799|Caenorhabditis elegans zyg-11 protein ... 28 6.7
U55370-1|AAA97993.3| 313|Caenorhabditis elegans Serpentine rece... 27 8.8
U40029-5|AAA81125.2| 457|Caenorhabditis elegans Hypothetical pr... 27 8.8
U40029-4|ABD94116.1| 471|Caenorhabditis elegans Hypothetical pr... 27 8.8
U23525-5|AAC46568.1| 465|Caenorhabditis elegans Yeast smf (diva... 27 8.8
AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cel... 27 8.8
AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. 27 8.8
>AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD containing
protein protein.
Length = 321
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/95 (24%), Positives = 45/95 (47%)
Frame = +3
Query: 360 SEEIKPKIKHDWYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELE 539
+ EI K + DW+ + V + + + AL + + ++ S ++ L+ +
Sbjct: 214 NNEIVSKFREDWFSSNGFVTINVYCRGALPETANIVSDGHTVRVSMKHGFGNASVDLDYD 273
Query: 540 LAHEIIPTMCSYVVSPSKIEIKLRKKEGLRWNQLE 644
L E+IP V+ K+EI L++K G W +L+
Sbjct: 274 LWDEVIPEESRVVIGERKVEISLKQKHGTGWPRLK 308
>AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein
protein 1 protein.
Length = 321
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/95 (24%), Positives = 45/95 (47%)
Frame = +3
Query: 360 SEEIKPKIKHDWYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELE 539
+ EI K + DW+ + V + + + AL + + ++ S ++ L+ +
Sbjct: 214 NNEIVSKFREDWFSSNGFVTINVYCRGALPETANIVSDGHTVRVSMKHGFGNASVDLDYD 273
Query: 540 LAHEIIPTMCSYVVSPSKIEIKLRKKEGLRWNQLE 644
L E+IP V+ K+EI L++K G W +L+
Sbjct: 274 LWDEVIPEESRVVIGERKVEISLKQKHGTGWPRLK 308
>Z74030-14|CAA98442.1| 198|Caenorhabditis elegans Hypothetical
protein D1054.3 protein.
Length = 198
Score = 34.3 bits (75), Expect = 0.077
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +3
Query: 378 KIKHDWYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELAHEII 557
K +HDW+Q+E+ V +TIL + D V S+ + + + D E +L+ ++
Sbjct: 4 KPRHDWFQSETDVTLTILKRGVPLDDCSVSLSDNN---TLTVKQCD-EILFYGQLSGQVK 59
Query: 558 PTMCSYVVSPSKIEIKLRK-KEGLRWNQLEGEG 653
+ + +K+E++L K RW L +G
Sbjct: 60 KDDLTVKCTAAKVEVRLPKFARNERWASLLKDG 92
>L16621-13|ABD63202.1| 141|Caenorhabditis elegans Hypothetical
protein ZK688.12 protein.
Length = 141
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 393 WYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELAH 548
W+ TE+++V+ KN + ++KV ++ P D E S+E+EL H
Sbjct: 33 WFYTEARLVIKNPTKNRYTYKIKVTNND-MFDIRTPKGFIDPETSIEIELLH 83
>AF003140-1|ABR92609.1| 538|Caenorhabditis elegans Hypothetical
protein C44E4.5 protein.
Length = 538
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 327 IMSEEQKNSCVSEEIKPKIKHDWYQTESQVVVTILIKNALS-DQVKVQYSERSL 485
+ SE+ E+++ K++H W QT + + V +K+ +S + VK+ ++ +
Sbjct: 235 LSSEKPHVEGQQEDMEEKVEHSWEQTGNIIQVAFKLKSEISKEDVKIDTTKTGI 288
>Z46676-1|CAA86661.1| 799|Caenorhabditis elegans Hypothetical
protein C08B11.1 protein.
Length = 799
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -3
Query: 627 LDLPSYVA*SLSSTGSLRNCTLLVLFHVLIQVPNCTRSLS*VTDKKRID 481
LD+ S +S SLRN +L+++++ I + T +LS +T + +D
Sbjct: 188 LDISSTCVTDISCISSLRNLEVLIMYNLNILKGDVTETLSNLTKLRVLD 236
>X16473-1|CAA34493.1| 799|Caenorhabditis elegans zyg-11 protein
protein.
Length = 799
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -3
Query: 627 LDLPSYVA*SLSSTGSLRNCTLLVLFHVLIQVPNCTRSLS*VTDKKRID 481
LD+ S +S SLRN +L+++++ I + T +LS +T + +D
Sbjct: 188 LDISSTCVTDISCISSLRNLEVLIMYNLNILKGDVTETLSNLTKLRVLD 236
>U55370-1|AAA97993.3| 313|Caenorhabditis elegans Serpentine
receptor, class x protein77 protein.
Length = 313
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -1
Query: 404 RLVPIMFDLRLNFFRNTGILLFFRHYLWLFLQLRSTLALKLSTYV*FHFVFFKLSRKFNS 225
RLV I F L+ NF + L F H+++ ++R+ + Y F+ F +
Sbjct: 114 RLVAIYFPLKYNFLFGIKLTLAF-HFIYYLDRVRNVTFENIDRYKDSKFMLFSVKHLAYG 172
Query: 224 AIFL 213
+F+
Sbjct: 173 GVFV 176
>U40029-5|AAA81125.2| 457|Caenorhabditis elegans Hypothetical
protein F10G7.5a protein.
Length = 457
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -2
Query: 562 VGIISCANSSSKLYSESE--LGNGQEKDRLRSLYWTLTWSLRAFLINIVTTTCDSVWYQS 389
+G+I ++ E+E +G E ++ W + FL+ ++ TC++VW Q
Sbjct: 212 IGLIFIGQPEGDIHVETENLIGTNSEIRVEQARVWPQLRTT-TFLVLFLSLTCNAVWVQ- 269
Query: 388 CLIFGLISSETQEFFCS 338
L GL + Q+F S
Sbjct: 270 -LTSGLYKAYGQQFIDS 285
>U40029-4|ABD94116.1| 471|Caenorhabditis elegans Hypothetical
protein F10G7.5b protein.
Length = 471
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -2
Query: 562 VGIISCANSSSKLYSESE--LGNGQEKDRLRSLYWTLTWSLRAFLINIVTTTCDSVWYQS 389
+G+I ++ E+E +G E ++ W + FL+ ++ TC++VW Q
Sbjct: 226 IGLIFIGQPEGDIHVETENLIGTNSEIRVEQARVWPQLRTT-TFLVLFLSLTCNAVWVQ- 283
Query: 388 CLIFGLISSETQEFFCS 338
L GL + Q+F S
Sbjct: 284 -LTSGLYKAYGQQFIDS 299
>U23525-5|AAC46568.1| 465|Caenorhabditis elegans Yeast smf
(divalent cation transporter)homolog protein 2 protein.
Length = 465
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 163 LICWLTTNKQAQEFQTIHILEYFKVICLLLIIIFSKMLVFSLYIKKRF-VGKFVF 2
+I + ++ + F+T L+YF +IC ++ I + +F Y+ + F G +F
Sbjct: 351 MITFTSSKRIMHNFRTSKPLQYFSIICGIITIGINVYFIFQ-YVTENFGTGWLIF 404
>AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cell
migration protein 30 protein.
Length = 787
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +3
Query: 429 LIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELAHEIIPTMCSYVVSPSKIEIKL 608
L+ L+ VK+ Y+ + FSC + ++ S ++L + I + ++ PS+I +
Sbjct: 674 LLSPLLAANVKLVYTRTQVLFSCLVADTLSSKEVQLPQSFSKIQDVSVHIEQPSRIPMVP 733
Query: 609 RKKEGLRWNQLEG 647
R + ++ G
Sbjct: 734 RLDRTMNGDKKNG 746
>AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein.
Length = 787
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +3
Query: 429 LIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELAHEIIPTMCSYVVSPSKIEIKL 608
L+ L+ VK+ Y+ + FSC + ++ S ++L + I + ++ PS+I +
Sbjct: 674 LLSPLLAANVKLVYTRTQVLFSCLVADTLSSKEVQLPQSFSKIQDVSVHIEQPSRIPMVP 733
Query: 609 RKKEGLRWNQLEG 647
R + ++ G
Sbjct: 734 RLDRTMNGDKKNG 746
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,239,966
Number of Sequences: 27780
Number of extensions: 250726
Number of successful extensions: 858
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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