BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmte11d20 (681 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080... 29 4.5 08_01_0325 + 2917942-2918193,2919057-2919340,2919453-2919549,291... 29 4.5 12_02_1085 - 25935688-25935948,25936589-25936657,25937244-259373... 28 6.0 05_03_0276 - 11485123-11485136,11486549-11487557 28 6.0 09_01_0128 + 1932721-1935181,1936099-1936256 28 7.9 >11_06_0109 + 20202629-20205452,20206354-20206578,20207208-20208091, 20208692-20208814 Length = 1351 Score = 28.7 bits (61), Expect = 4.5 Identities = 14/50 (28%), Positives = 27/50 (54%) Frame = +3 Query: 405 NPPKLYADTYNYLNEKLMQPVVKEVYHDLNTISPANTVMNNPIASQIGLP 554 N + +T+ YL+ L+ + E+ +L T+ +N ++ P+ S IG P Sbjct: 581 NMETMLLETF-YLDSNLITGEIPELPINLETLDISNNYLSGPLPSNIGAP 629 >08_01_0325 + 2917942-2918193,2919057-2919340,2919453-2919549, 2919677-2919712,2920570-2920715,2920882-2920987, 2921160-2921219,2921848-2921898 Length = 343 Score = 28.7 bits (61), Expect = 4.5 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = -1 Query: 603 SECSVLNYLTGFVLIVMEDRFEMLLGYSSQCL 508 S +V N G + ++DRFE+L G +C+ Sbjct: 22 SSSAVENLAAGMAAMSLQDRFELLRGIGEECI 53 >12_02_1085 - 25935688-25935948,25936589-25936657,25937244-25937315, 25937693-25937791,25937927-25938007,25938099-25938586, 25938728-25938857,25939994-25940239 Length = 481 Score = 28.3 bits (60), Expect = 6.0 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = +3 Query: 444 NEKLMQPVVKEVYHDLNTISPANTVMNNPIASQIGLPLQSGQTPLNNLTQ 593 N + Q ++K+ YH + + + M NP+A + LQS L++ T+ Sbjct: 273 NRSIDQKILKKEYHRMVLLVHPDKNMGNPLACESFKKLQSAYEVLSDFTK 322 >05_03_0276 - 11485123-11485136,11486549-11487557 Length = 340 Score = 28.3 bits (60), Expect = 6.0 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = +3 Query: 216 NSDNNPQNLANSYST-NHGSC 275 N+DNNP N +T NHGSC Sbjct: 292 NTDNNPSNTNGDDTTNNHGSC 312 >09_01_0128 + 1932721-1935181,1936099-1936256 Length = 872 Score = 27.9 bits (59), Expect = 7.9 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = -1 Query: 327 SHARENHSYCDCDNRLVDNFHDL*NNCLLSSEDYYQN*KRFSPYSHNQHFL 175 SH +E H +C ++ + + N L E + +R++ S +HFL Sbjct: 328 SHGQETHPFCSGVDKRQKHIDQIQTNSLGMQEKHTDKFERYANGSREKHFL 378 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,080,019 Number of Sequences: 37544 Number of extensions: 275039 Number of successful extensions: 539 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 536 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 539 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1721314888 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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