Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d20
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39471| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_25691| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             28   6.1  

>SB_39471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +3

Query: 501 SPANTVMNNPIASQIGLPL-QSGQTPLNNLTQN--IPSVNNP 617
           +P N   NNPI  Q   P+ Q    P+N    N  I   NNP
Sbjct: 7   NPINQQANNPINQQASNPINQQANNPINQQANNPMIQQANNP 48


>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +3

Query: 465 VVKEVYHDLNTISPANTVMNNPIASQIGLPLQSGQTPLNNLTQNIPSVNNPAKI 626
           ++  +  D+NTI   + +MN+ I++ I + +    + +N++  NI S  N  KI
Sbjct: 195 IMININSDINTIKIIDNIMNSDISTIIRIIINVTNSHINSIMININSDINTIKI 248


>SB_25691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 318 RENHSYCDCDNRLV-DNFHDL*NNCLLSSEDYY 223
           REN+ YC  +  L  +N++   +N LLS E+YY
Sbjct: 141 RENYYYCGHNWLLTRENYYSCGHNWLLSRENYY 173


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 390  CFGQCNPPKLYADTYNYLNEKLMQPVVKEVYHDLNTISPANT 515
            C    + PK Y DTYN  N    +P     Y  +  I P  T
Sbjct: 1400 CTSGVSVPKPYIDTYNVTNGTCPEPSFLGQYTGIGNICPPGT 1441


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,247,308
Number of Sequences: 59808
Number of extensions: 352427
Number of successful extensions: 868
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)