Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d20
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U40955-1|AAA81747.3|  233|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical
           protein M163.5 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +3

Query: 420 YADTYNYLNEKLMQPVVKEVYHDLNTISPANTVMNNPIASQIGLPLQSGQTPLNNLTQNI 599
           Y+    +LN+       K V+ +    S   +   NP+  Q+ LP      P  +LT   
Sbjct: 265 YSSFNRHLNKNSTNSKPKSVHSESRDSSKQRSTTTNPVQKQVDLP-----KPKADLTTKH 319

Query: 600 PSVNNPAKI 626
            S N+P K+
Sbjct: 320 SSSNSPHKL 328


>U40955-1|AAA81747.3|  233|Caenorhabditis elegans Hypothetical
           protein F48B9.5 protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 378 VNRPCFGQCNPPKLYADTYNYLN-EKLMQPVVKEVYHDLNTISPA 509
           ++ P      P  L  D   +LN +    P+ K VYH  ++I+PA
Sbjct: 1   MDEPVIDTSTPESLERDFMAWLNSDPTNTPIRKSVYHSSDSIAPA 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,995,632
Number of Sequences: 27780
Number of extensions: 278596
Number of successful extensions: 637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)