Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d20
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30750.1 68414.m03758 expressed protein                             31   0.53 
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa...    28   5.0  
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa...    28   5.0  
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa...    28   5.0  
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa...    28   5.0  
At1g74130.1 68414.m08586 rhomboid family protein contains Pfam p...    28   6.6  
At1g71410.1 68414.m08247 protein kinase family protein contains ...    27   8.7  

>At1g30750.1 68414.m03758 expressed protein
          Length = 212

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
 Frame = +3

Query: 354 GYPAGSSHVNRPCFGQCNPPKLYADTYNY-LNEKLM-QPVVKE-VYHDLNTISPANTVMN 524
           G P+ SS VN+P  G   P   +    +  L + ++ QP     V   L  I+   T  N
Sbjct: 53  GQPSSSSPVNQPLTGLSQPLIGFNQPSSTGLKQPILGQPSTSSSVNQPLTGINQPLTGFN 112

Query: 525 NPIASQIGLPLQSGQTPLNNLTQNIPSVNNPAKIGMGPEIINMVMGSSG--NKP 680
            P ++ +  P+    +  ++L Q +   N P+  G    I +    SS   N+P
Sbjct: 113 QPSSTGLNNPILGQPSTSSSLNQPLTGFNQPSSTGFNQPISSSSSSSSSAQNQP 166


>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 986

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 552 PLQSGQTPLNNLTQNIPSVNNPAKIGMGPEIINMVMGSSGNKP 680
           P+ +G  PL    Q  PS+   A  G+  E++N+ +G+ G KP
Sbjct: 71  PVHNG--PLTRARQ-APSIMPSAADGVKSEVLNVAVGADGEKP 110


>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 983

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 552 PLQSGQTPLNNLTQNIPSVNNPAKIGMGPEIINMVMGSSGNKP 680
           P+ +G  PL    Q  PS+   A  G+  E++N+ +G+ G KP
Sbjct: 71  PVHNG--PLTRARQ-APSIMPSAADGVKSEVLNVAVGADGEKP 110


>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 985

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 552 PLQSGQTPLNNLTQNIPSVNNPAKIGMGPEIINMVMGSSGNKP 680
           P+ +G  PL    Q  PS+   A  G+  E++N+ +G+ G KP
Sbjct: 71  PVHNG--PLTRARQ-APSIMPSAADGVKSEVLNVAVGADGEKP 110


>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 985

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 552 PLQSGQTPLNNLTQNIPSVNNPAKIGMGPEIINMVMGSSGNKP 680
           P+ +G  PL    Q  PS+   A  G+  E++N+ +G+ G KP
Sbjct: 71  PVHNG--PLTRARQ-APSIMPSAADGVKSEVLNVAVGADGEKP 110


>At1g74130.1 68414.m08586 rhomboid family protein contains Pfam
           profile PF01694: Rhomboid family
          Length = 322

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -3

Query: 631 IPIFAGLFTLGMFCVKLFNG 572
           +P+FAG+++LG+  +K+  G
Sbjct: 271 VPVFAGIYSLGLNIIKMLEG 290


>At1g71410.1 68414.m08247 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 909

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 384 RPCFGQCNPPKLYADTYNYLNEKLMQPVVKEVYHDLNTISPAN 512
           +P F   N  K+Y +T NY+  +    +  E+  DL  +   N
Sbjct: 285 KPLFDCNNNVKMYMNTLNYITNESFSSIPSELVSDLQRMLSTN 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,864,288
Number of Sequences: 28952
Number of extensions: 245789
Number of successful extensions: 505
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)