Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d19
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47682| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)               29   2.7  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      28   6.1  

>SB_47682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 302 PCVEMQQPATPQDPGASPYPLQPTDKIAPLPKQ 400
           PC   Q P  P  P A P PL P   +AP  +Q
Sbjct: 91  PCAGQQMPLAPPMPLAPPVPLAPPMPLAPPVQQ 123



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 302 PCVEMQQPATPQDPGASPYPLQPTDKIAP 388
           PC   Q P  P  P A P PL P  + AP
Sbjct: 54  PCAGQQMPLAPLMPLAPPMPLAPPVQQAP 82


>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1626

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 294 VPYPVLKCNSPQPHRIQ-VLPRTRFSQRTRSHHCQNSETTS 413
           VP P  + + P P+ +  V+P T   Q++ S H  ++ TT+
Sbjct: 606 VPSPATQMSYPNPYMLGIVMPTTNVQQQSTSSHTSSTSTTT 646


>SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)
          Length = 749

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 294 VPYPVLKCNSPQPHRIQ-VLPRTRFSQRTRSHHCQNSETTS 413
           VP P  + + P P+ +  V+P T   Q++ S H  ++ TT+
Sbjct: 586 VPSPATQMSYPNPYMLGIVMPTTNVQQQSTSSHTSSTSTTT 626


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 333 HRIQVLPRTRFSQRTRSHHCQNSETTSLSEHVTTMTD*LLPSD*HCWRQ 479
           H++ V P   +S   R+ HC   E T  S+ + +       S  HC+++
Sbjct: 106 HKMDVKPCHNYSSSERAIHCYKGEETVSSQDIPSHNHPSSESAIHCYKR 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,867,359
Number of Sequences: 59808
Number of extensions: 428997
Number of successful extensions: 1276
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)