Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d16
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    27   1.5  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    25   6.1  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   6.1  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    25   6.1  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   8.0  

>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 50  PVIILLTISMDILFVD-NERQDEIETFYEASQRQR 151
           P++    I  D++F+D + R D I+ F +A++R R
Sbjct: 136 PILGWFMILSDVVFIDRSRRSDAIQLFAKAARRMR 170


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
 Frame = +2

Query: 107 QDEIETFYEASQ-----RQRDYYRGLRKAYHPLTYFSDPEYMWQCPA---EMTPTY 250
           ++ +ETFY   +     +++D+Y       H    + +P+Y+W+  A    ++P Y
Sbjct: 651 EEHLETFYNQLKDIVISKKKDFYAHSDVPAHQPDVWFEPKYLWEVLAADLSLSPVY 706


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 179 YHPLTYFSDPEYMWQCPAEMTP 244
           ++P+ +F + EY+W     +TP
Sbjct: 164 FYPVIFFPNKEYLWTGSDSLTP 185


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 344 GREARELRACGPESPVKL 291
           G +A+E+  CG ES VKL
Sbjct: 280 GLQAKEIHLCGEESVVKL 297


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 191 STGGRPYVVLYNNLFVVDLPRKTFRFHLVSHYQQTKYP 78
           S  G P  V+YN+   V +P  T     + +Y    YP
Sbjct: 251 SRSGLPLSVMYNHFPSVPIPPATVNDTSMEYYLPNAYP 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,789
Number of Sequences: 5004
Number of extensions: 36487
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)