Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d16
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4274| Best HMM Match : LRV (HMM E-Value=5.7)                        32   0.22 
SB_46102| Best HMM Match : RVT_1 (HMM E-Value=2.6e-14)                 29   2.7  
SB_53294| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_2231| Best HMM Match : Pro_3_hydrox_C (HMM E-Value=2.1)             28   4.7  
SB_42848| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)                 27   8.2  

>SB_4274| Best HMM Match : LRV (HMM E-Value=5.7)
          Length = 327

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 80  DILFVDNERQDEIETFYEASQRQRDYYRGLRKAYHPLTYFSDPEYM-WQCPAEMTPTYLS 256
           D+LF D E +DE+E    AS  +    RG  +  +  +  S   Y    C +    T   
Sbjct: 231 DMLF-DFEEKDEMEKANNASFARNSTTRGFSRVDYSSSLASGFNYSDTSCASASNSTSSG 289

Query: 257 FPMYHVKYKQPA 292
           F +YH+ + QPA
Sbjct: 290 FNLYHLGHMQPA 301


>SB_46102| Best HMM Match : RVT_1 (HMM E-Value=2.6e-14)
          Length = 595

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 430 FRVRVVLVVCDLSNKGFTSCFVESP 356
           F   +  V+CDL N   T CF  SP
Sbjct: 198 FSFELAPVICDLYNSSLTDCFFPSP 222


>SB_53294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 26/88 (29%), Positives = 39/88 (44%)
 Frame = +2

Query: 50  PVIILLTISMDILFVDNERQDEIETFYEASQRQRDYYRGLRKAYHPLTYFSDPEYMWQCP 229
           PV +L T  M  +    E  D+  +   +  + R   R +R+  H      D  Y+   P
Sbjct: 64  PVTVLNTALMQSMLARRETIDKSPSKLHSKLQLRQT-RVIRRQIHQDVGI-DNCYIQSEP 121

Query: 230 AEMTPTYLSFPMYHVKYKQPAVLPVTLG 313
            ++ PT+LS P Y V      VLPV +G
Sbjct: 122 KQIPPTFLSAPCYLV------VLPVLIG 143


>SB_2231| Best HMM Match : Pro_3_hydrox_C (HMM E-Value=2.1)
          Length = 265

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -1

Query: 248 K*VSFRRGTATYIQDH*NRSTGGRPYVVLYNNLFVVDLPR 129
           K +  R G   +IQ   NR  GGRP+ V  N L  V  PR
Sbjct: 185 KYIEHREGEGVFIQHAGNRGEGGRPHTV--NPLTNVIRPR 222


>SB_42848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/41 (46%), Positives = 21/41 (51%)
 Frame = +3

Query: 111 MKSKRFTRQVNDKEIIIEDYVRPTTR*PISVILNICGSAPP 233
           MKSK  TRQV DK  +IE +        IS  LNI  S  P
Sbjct: 1   MKSKEHTRQVRDK--VIEKFKAGLGYKKISKALNIPRSTVP 39


>SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)
          Length = 195

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 457 YHVEYFDIKFRVRVVLVVCDLSNKGFTSCFVESPG*GTVGKRGNC 323
           Y V YFD + R   + V+  L++  FT   V  P    +   G C
Sbjct: 5   YRVVYFDARARAECIRVLLHLADVPFTDERVAPPDWAAMKTSGRC 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,938,184
Number of Sequences: 59808
Number of extensions: 263100
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)