Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d16
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   3.0  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   3.0  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   3.0  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   3.0  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   3.0  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   3.0  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   3.0  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   3.0  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   3.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   3.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.0  
AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly pro...    22   4.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.0  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    21   5.3  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    21   5.3  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    21   5.3  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    21   5.3  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   5.3  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   5.3  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   5.3  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.2  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 413 YNSNSEFYVKIFYMIN 460
           YN+N+ +  K++Y IN
Sbjct: 96  YNNNNNYNKKLYYNIN 111


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY  N+N   Y K++Y IN
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY  N+N   Y K++Y IN
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY  N+N   Y K++Y IN
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY  N+N   Y K++Y IN
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY  N+N   Y K++Y IN
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY  N+N   Y K++Y IN
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY  N+N   Y K++Y IN
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY  N+N   Y K++Y IN
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 413 YNSNSEFYVKIFYMIN 460
           YN+N+ +  K++Y IN
Sbjct: 334 YNNNNNYNKKLYYNIN 349


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 406 LLIQLELGILCQNI 447
           LL+ + LGI CQNI
Sbjct: 5   LLLMVCLGIACQNI 18


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 277 FHVVHRKAEISRCHFGGALPHIFRIT 200
           FH+     E  R H  G++    R+T
Sbjct: 108 FHIATTSNEFIRIHHSGSITRSIRLT 133


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 277 FHVVHRKAEISRCHFGGALPHIFRIT 200
           FH+     E  R H  G++    R+T
Sbjct: 108 FHIATTSNEFIRIHHSGSITRSIRLT 133


>AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly
           protein MRJP4 protein.
          Length = 27

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 406 LLIQLELGILCQNI 447
           LL+ + LGI CQNI
Sbjct: 5   LLLMVCLGIACQNI 18


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 277 FHVVHRKAEISRCHFGGALPHIFRIT 200
           FH+     E  R H  G++    R+T
Sbjct: 47  FHIATTSNEFIRIHHSGSITRSIRLT 72


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY YN+ +  Y  ++Y IN
Sbjct: 88  NYNYNNYNNNYKPLYYNIN 106


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY YN+ +  Y  ++Y IN
Sbjct: 88  NYNYNNYNNNYKPLYYNIN 106


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY YN+ +  Y  ++Y IN
Sbjct: 88  NYNYNNYNNNYKPLYYNIN 106


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY YN+ +  Y  ++Y IN
Sbjct: 88  NYNYNNYNNNYKPLYYNIN 106


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY YN+ +  Y  ++Y IN
Sbjct: 321 NYNYNNYNNNYKPLYYNIN 339


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY YN+ +  Y  ++Y IN
Sbjct: 321 NYNYNNYNNNYKPLYYNIN 339


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY YN+ +  Y  ++Y IN
Sbjct: 321 NYNYNNYNNNYKPLYYNIN 339


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 NY*YNSNSEFYVKIFYMIN 460
           NY YN+ +  Y  ++Y IN
Sbjct: 310 NYNYNNYNNNYKPLYYNIN 328


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 107 QDEIETFYEASQRQRDYYRGLR 172
           ++ I  FY  S R  D   GLR
Sbjct: 463 ENRISNFYNGSFRNLDQLTGLR 484


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 342 TVP*PGDSTKQLVKPLLDKSQTTNTT 419
           T+P P D      +P   KSQ + TT
Sbjct: 27  TMPMPDDMRTVTKRPKTKKSQGSRTT 52


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 199 Q*S*IYVAVPRRNDTYLSQLSDVPREI 279
           Q S ++VA+PR  D     L  V RE+
Sbjct: 69  QQSTVFVAIPRIQDGVPLTLGYVTREV 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,433
Number of Sequences: 438
Number of extensions: 2752
Number of successful extensions: 26
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)